Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10698 | 5' | -59.1 | NC_002794.1 | + | 182996 | 0.66 | 0.855439 |
Target: 5'- cGGCGcuucgCCgcggGcGCCcCGCGCGCG-CCCGc -3' miRNA: 3'- -CCGUa----GGa---C-CGGuGUGUGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 185753 | 0.66 | 0.855439 |
Target: 5'- cGCGUCCa-GCCGCcgGCGCGgccgCCCGu -3' miRNA: 3'- cCGUAGGacCGGUGugUGCGCa---GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 123576 | 0.66 | 0.862066 |
Target: 5'- aGCG-CCacGGCCGC-CGCccgugcaGCGUCCCGg -3' miRNA: 3'- cCGUaGGa-CCGGUGuGUG-------CGCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 102418 | 0.66 | 0.862793 |
Target: 5'- cGGCcguggCCgaGGCCGC-CACGCGcaugUCCGa -3' miRNA: 3'- -CCGua---GGa-CCGGUGuGUGCGCa---GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 130391 | 0.66 | 0.862793 |
Target: 5'- aGGCcgCCUGGCUgucggACGC-CGCGaCCa- -3' miRNA: 3'- -CCGuaGGACCGG-----UGUGuGCGCaGGgc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 85563 | 0.66 | 0.840183 |
Target: 5'- cGGCuUCCU-GCCACGCGCGaccaauCGgggccCCCGg -3' miRNA: 3'- -CCGuAGGAcCGGUGUGUGC------GCa----GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 55626 | 0.66 | 0.840183 |
Target: 5'- uGCAcgCUGGCCA-GCACGCGggCCGg -3' miRNA: 3'- cCGUagGACCGGUgUGUGCGCagGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 100574 | 0.67 | 0.824234 |
Target: 5'- cGGCA-CCUcuucacgcucgGGCCGUGCGCGCcGaUCCCGg -3' miRNA: 3'- -CCGUaGGA-----------CCGGUGUGUGCG-C-AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 101971 | 0.66 | 0.830694 |
Target: 5'- cGGCGUCCaucaccacgaucGGCCGCgACAUGC-UCUCGc -3' miRNA: 3'- -CCGUAGGa-----------CCGGUG-UGUGCGcAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 130553 | 0.67 | 0.824234 |
Target: 5'- cGGCGUC---GCCGCGCACGUguuggcgagGUCUCGa -3' miRNA: 3'- -CCGUAGgacCGGUGUGUGCG---------CAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 23711 | 0.66 | 0.832292 |
Target: 5'- aGCGUCCcgaaCCGCGCGCGgCGggCCCGa -3' miRNA: 3'- cCGUAGGacc-GGUGUGUGC-GCa-GGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 125985 | 0.66 | 0.832292 |
Target: 5'- uGCAg-CUGGCCACGCAgcaGC-UCCUGg -3' miRNA: 3'- cCGUagGACCGGUGUGUg--CGcAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 30068 | 0.66 | 0.832292 |
Target: 5'- cGGgGUCC-GGUCGCccggucgacgagGCGCGCGgccggUCCCGa -3' miRNA: 3'- -CCgUAGGaCCGGUG------------UGUGCGC-----AGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 36353 | 0.66 | 0.832292 |
Target: 5'- cGGCGUgCgcGGCCACcgggUGCGCG-CCCGc -3' miRNA: 3'- -CCGUAgGa-CCGGUGu---GUGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 49744 | 0.66 | 0.832292 |
Target: 5'- uGGCGagcCCguaGGCCGCucGCACGCG-CUCGu -3' miRNA: 3'- -CCGUa--GGa--CCGGUG--UGUGCGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 53234 | 0.66 | 0.832292 |
Target: 5'- cGGUccGUCCUcGGCCcgcCGCGCcgGCGUCgCCGc -3' miRNA: 3'- -CCG--UAGGA-CCGGu--GUGUG--CGCAG-GGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 180608 | 0.66 | 0.832292 |
Target: 5'- cGCG-CCgcgGGCCACgACACGgCGgCCCa -3' miRNA: 3'- cCGUaGGa--CCGGUG-UGUGC-GCaGGGc -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 67222 | 0.66 | 0.832292 |
Target: 5'- cGGCG-CCgGGCgGCuaAC-CGCGUCUCGa -3' miRNA: 3'- -CCGUaGGaCCGgUG--UGuGCGCAGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 193307 | 0.66 | 0.832292 |
Target: 5'- cGC-UCC-GcGCCGCACGCaGCG-CCCGa -3' miRNA: 3'- cCGuAGGaC-CGGUGUGUG-CGCaGGGC- -5' |
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10698 | 5' | -59.1 | NC_002794.1 | + | 153662 | 0.66 | 0.835469 |
Target: 5'- cGCGUCC-GGCCGCcgguugugaggcucgACGCGCGaCCgGc -3' miRNA: 3'- cCGUAGGaCCGGUG---------------UGUGCGCaGGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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