miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10698 5' -59.1 NC_002794.1 + 36353 0.66 0.832292
Target:  5'- cGGCGUgCgcGGCCACcgggUGCGCG-CCCGc -3'
miRNA:   3'- -CCGUAgGa-CCGGUGu---GUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 49744 0.66 0.832292
Target:  5'- uGGCGagcCCguaGGCCGCucGCACGCG-CUCGu -3'
miRNA:   3'- -CCGUa--GGa--CCGGUG--UGUGCGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 53234 0.66 0.832292
Target:  5'- cGGUccGUCCUcGGCCcgcCGCGCcgGCGUCgCCGc -3'
miRNA:   3'- -CCG--UAGGA-CCGGu--GUGUG--CGCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 180608 0.66 0.832292
Target:  5'- cGCG-CCgcgGGCCACgACACGgCGgCCCa -3'
miRNA:   3'- cCGUaGGa--CCGGUG-UGUGC-GCaGGGc -5'
10698 5' -59.1 NC_002794.1 + 67222 0.66 0.832292
Target:  5'- cGGCG-CCgGGCgGCuaAC-CGCGUCUCGa -3'
miRNA:   3'- -CCGUaGGaCCGgUG--UGuGCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 193307 0.66 0.832292
Target:  5'- cGC-UCC-GcGCCGCACGCaGCG-CCCGa -3'
miRNA:   3'- cCGuAGGaC-CGGUGUGUG-CGCaGGGC- -5'
10698 5' -59.1 NC_002794.1 + 101971 0.66 0.830694
Target:  5'- cGGCGUCCaucaccacgaucGGCCGCgACAUGC-UCUCGc -3'
miRNA:   3'- -CCGUAGGa-----------CCGGUG-UGUGCGcAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 130553 0.67 0.824234
Target:  5'- cGGCGUC---GCCGCGCACGUguuggcgagGUCUCGa -3'
miRNA:   3'- -CCGUAGgacCGGUGUGUGCG---------CAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 100574 0.67 0.824234
Target:  5'- cGGCA-CCUcuucacgcucgGGCCGUGCGCGCcGaUCCCGg -3'
miRNA:   3'- -CCGUaGGA-----------CCGGUGUGUGCG-C-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 117597 0.67 0.824234
Target:  5'- -------aGGCCugGCACGCGUCCa- -3'
miRNA:   3'- ccguaggaCCGGugUGUGCGCAGGgc -5'
10698 5' -59.1 NC_002794.1 + 40575 0.67 0.824234
Target:  5'- cGcCGUCCUGGCCGCGgGCccucuccuccgaGuCGUCgCCGg -3'
miRNA:   3'- cC-GUAGGACCGGUGUgUG------------C-GCAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 125940 0.67 0.816016
Target:  5'- aGCAguUCCUcguGGCCGCcuGCGCGCucGUCgCCGa -3'
miRNA:   3'- cCGU--AGGA---CCGGUG--UGUGCG--CAG-GGC- -5'
10698 5' -59.1 NC_002794.1 + 57569 0.67 0.811011
Target:  5'- cGcCAUCCUGGCCgACuucgagucacaggccGCGCGCGUggccaCCGa -3'
miRNA:   3'- cC-GUAGGACCGG-UG---------------UGUGCGCAg----GGC- -5'
10698 5' -59.1 NC_002794.1 + 43738 0.67 0.807644
Target:  5'- cGGCcuUCUUGGCCAC-CugGgugcCGUUCCGc -3'
miRNA:   3'- -CCGu-AGGACCGGUGuGugC----GCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 80749 0.67 0.807644
Target:  5'- cGGgGUCCgGGCCACGCGCuCGgacCUCu -3'
miRNA:   3'- -CCgUAGGaCCGGUGUGUGcGCa--GGGc -5'
10698 5' -59.1 NC_002794.1 + 10987 0.67 0.799127
Target:  5'- uGC-UCCgaGGCCGCAaguggacCGUGUCCCGc -3'
miRNA:   3'- cCGuAGGa-CCGGUGUgu-----GCGCAGGGC- -5'
10698 5' -59.1 NC_002794.1 + 12653 0.67 0.799127
Target:  5'- gGGUA-CCgcaccGCCACGCugGUGaUCCCGc -3'
miRNA:   3'- -CCGUaGGac---CGGUGUGugCGC-AGGGC- -5'
10698 5' -59.1 NC_002794.1 + 37045 0.67 0.799127
Target:  5'- gGGUGUCCUGcCCGuCGCGCuCGUCCuCGu -3'
miRNA:   3'- -CCGUAGGACcGGU-GUGUGcGCAGG-GC- -5'
10698 5' -59.1 NC_002794.1 + 36589 0.67 0.799127
Target:  5'- aGGCgGUCCgcguGCCACACGaGCGccCCCGa -3'
miRNA:   3'- -CCG-UAGGac--CGGUGUGUgCGCa-GGGC- -5'
10698 5' -59.1 NC_002794.1 + 851 0.67 0.790472
Target:  5'- uGCGUUC-GGCCcaGCGCGCG-CCCGc -3'
miRNA:   3'- cCGUAGGaCCGGugUGUGCGCaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.