Results 41 - 60 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 184803 | 0.67 | 0.869153 |
Target: 5'- ---cUCCGGGCucAGCAGCGucACGG-GGCa -3' miRNA: 3'- ugacAGGCUCG--UCGUCGU--UGUCgCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 182941 | 0.67 | 0.861724 |
Target: 5'- --aGUCCGGcGCcgGGCucgAGcCGACGGCGGCc -3' miRNA: 3'- ugaCAGGCU-CG--UCG---UC-GUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 118255 | 0.67 | 0.861724 |
Target: 5'- gGCUGgaggucggCCgGGGCGGCGGCGcCGGCGuCg -3' miRNA: 3'- -UGACa-------GG-CUCGUCGUCGUuGUCGCcG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 150444 | 0.67 | 0.869153 |
Target: 5'- --aGUCCGGGCGGguGCGGauccCGGaaGGCu -3' miRNA: 3'- ugaCAGGCUCGUCguCGUU----GUCg-CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 152629 | 0.67 | 0.861724 |
Target: 5'- cGCUcGUCCuGGGCGGC-GUucgAGCGGCg -3' miRNA: 3'- -UGA-CAGG-CUCGUCGuCGuugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 123267 | 0.67 | 0.861724 |
Target: 5'- gGCUgGUCCGGGCcGCGGUcgUcGCGGg -3' miRNA: 3'- -UGA-CAGGCUCGuCGUCGuuGuCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 83033 | 0.67 | 0.854092 |
Target: 5'- gGCg--CCGGGCGGCAcCcACGGCGGa -3' miRNA: 3'- -UGacaGGCUCGUCGUcGuUGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 112535 | 0.67 | 0.861724 |
Target: 5'- --gGUCCaagaAGUAGCGGUAGCGG-GGCu -3' miRNA: 3'- ugaCAGGc---UCGUCGUCGUUGUCgCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 105269 | 0.67 | 0.854092 |
Target: 5'- gGCUGUagUCGAGCAGCcAGCGuugcuCGGgguccCGGCu -3' miRNA: 3'- -UGACA--GGCUCGUCG-UCGUu----GUC-----GCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 120067 | 0.67 | 0.869153 |
Target: 5'- cGCggaggCCGAcGCGGCGGUGGCGGCGa- -3' miRNA: 3'- -UGaca--GGCU-CGUCGUCGUUGUCGCcg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 110623 | 0.67 | 0.869153 |
Target: 5'- ------gGAGCcGCGGCGccGCGGCGGCg -3' miRNA: 3'- ugacaggCUCGuCGUCGU--UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 142384 | 0.67 | 0.869153 |
Target: 5'- ------gGAGCGGCGGaGACGGCGGUg -3' miRNA: 3'- ugacaggCUCGUCGUCgUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 141395 | 0.67 | 0.879201 |
Target: 5'- --cGUUCGGGgGGCucGGCGACgacgaugaccucgggGGCGGCg -3' miRNA: 3'- ugaCAGGCUCgUCG--UCGUUG---------------UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 153120 | 0.67 | 0.876373 |
Target: 5'- gACU--UCGGGUucGGUGGCGGCAGCGGg -3' miRNA: 3'- -UGAcaGGCUCG--UCGUCGUUGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 188361 | 0.67 | 0.876373 |
Target: 5'- --cGUCCGGcCGGCGGCGGCcgAG-GGCg -3' miRNA: 3'- ugaCAGGCUcGUCGUCGUUG--UCgCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 113133 | 0.67 | 0.872066 |
Target: 5'- -gUGUCCGAgaggaagggcgggcGCGuCAGCGuguagcgcgcgcggGCGGCGGCg -3' miRNA: 3'- ugACAGGCU--------------CGUcGUCGU--------------UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 137930 | 0.67 | 0.876373 |
Target: 5'- cGCgGUCgaUGAGCuggaGGCAGCGGCGGauGCg -3' miRNA: 3'- -UGaCAG--GCUCG----UCGUCGUUGUCgcCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 121373 | 0.67 | 0.876373 |
Target: 5'- --cGUCCGAGcCGGCcGCcgccggGACcGCGGCc -3' miRNA: 3'- ugaCAGGCUC-GUCGuCG------UUGuCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 107870 | 0.67 | 0.869153 |
Target: 5'- cACUGcaUCgCGgaGGCGGCgcGGCGGguGCGGCu -3' miRNA: 3'- -UGAC--AG-GC--UCGUCG--UCGUUguCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 107529 | 0.67 | 0.869153 |
Target: 5'- gACgg-CCG-GC-GCGGCGcCGGCGGCg -3' miRNA: 3'- -UGacaGGCuCGuCGUCGUuGUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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