Results 121 - 140 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 139607 | 0.69 | 0.777405 |
Target: 5'- aACgGUcgaCCGAGauCAGC-GCGACGGUGGCg -3' miRNA: 3'- -UGaCA---GGCUC--GUCGuCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 67205 | 0.7 | 0.700439 |
Target: 5'- --cGUCCGGGCGGUgcgcucGGCGcCGgGCGGCu -3' miRNA: 3'- ugaCAGGCUCGUCG------UCGUuGU-CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 18681 | 0.7 | 0.700439 |
Target: 5'- gGCUGccgccgccgucUCCG-GCA-CGGCGGCGGCGGUc -3' miRNA: 3'- -UGAC-----------AGGCuCGUcGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 23960 | 0.7 | 0.700439 |
Target: 5'- cUUGgcUCCGAGcCAGCGGCGAgGcCGGCg -3' miRNA: 3'- uGAC--AGGCUC-GUCGUCGUUgUcGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 65232 | 0.7 | 0.690472 |
Target: 5'- -----aCGGGCGGCGGUcgccGCGGCGGCg -3' miRNA: 3'- ugacagGCUCGUCGUCGu---UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 146976 | 0.7 | 0.699444 |
Target: 5'- cCUGUCgCGAGgucggcgccgcCGGCcgacgucGGCGGCGGCGGCc -3' miRNA: 3'- uGACAG-GCUC-----------GUCG-------UCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 115565 | 0.7 | 0.690472 |
Target: 5'- --aG-CCGAGCAGCucGGCGAacgggacgUAGCGGCu -3' miRNA: 3'- ugaCaGGCUCGUCG--UCGUU--------GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 56270 | 0.7 | 0.690472 |
Target: 5'- ----aCCGGGCcgAGCAGCA--GGCGGCa -3' miRNA: 3'- ugacaGGCUCG--UCGUCGUugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 116944 | 0.7 | 0.680457 |
Target: 5'- --cGUCCccGGCGGCGGCGuCGGCGGg -3' miRNA: 3'- ugaCAGGc-UCGUCGUCGUuGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 21659 | 0.7 | 0.700439 |
Target: 5'- -----gCG-GCGGCGGUGGCGGCGGCg -3' miRNA: 3'- ugacagGCuCGUCGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 100096 | 0.7 | 0.700439 |
Target: 5'- --cGUCCGcguGCGGC-GCGuGCAGCGGUg -3' miRNA: 3'- ugaCAGGCu--CGUCGuCGU-UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 179957 | 0.7 | 0.71035 |
Target: 5'- --gGagCGAGCGaCAGCAGgAGCGGCa -3' miRNA: 3'- ugaCagGCUCGUcGUCGUUgUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 75367 | 0.7 | 0.720195 |
Target: 5'- ----aCCGAcccgccGCGGcCGGCGGCGGCGGCc -3' miRNA: 3'- ugacaGGCU------CGUC-GUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 54976 | 0.7 | 0.720195 |
Target: 5'- cUUG-CaCGAcccGCcGCGGCGACGGCGGCg -3' miRNA: 3'- uGACaG-GCU---CGuCGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 100538 | 0.7 | 0.720195 |
Target: 5'- ----aCCGAGgAGCAGCG--GGCGGCc -3' miRNA: 3'- ugacaGGCUCgUCGUCGUugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 180775 | 0.7 | 0.71035 |
Target: 5'- aACUGUCCGGGCGGUGGC--CGG-GGa -3' miRNA: 3'- -UGACAGGCUCGUCGUCGuuGUCgCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 55297 | 0.7 | 0.720195 |
Target: 5'- ------aGGGCGGCGGCGGCGucGCGGCg -3' miRNA: 3'- ugacaggCUCGUCGUCGUUGU--CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 129202 | 0.7 | 0.71035 |
Target: 5'- gACga-CCGAGCGGC--CGACGGCGGUg -3' miRNA: 3'- -UGacaGGCUCGUCGucGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 115045 | 0.7 | 0.71035 |
Target: 5'- uGCga-CCGGGCGGCgGGCGGCAGCGcCg -3' miRNA: 3'- -UGacaGGCUCGUCG-UCGUUGUCGCcG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 184351 | 0.7 | 0.680457 |
Target: 5'- --gGUCCGcagcucGCAGCGGCGcucccaGCAGCGGa -3' miRNA: 3'- ugaCAGGCu-----CGUCGUCGU------UGUCGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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