miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 183394 0.72 0.619843
Target:  5'- --cG-CCGAGCuGCAGCAACAGCcacGGg -3'
miRNA:   3'- ugaCaGGCUCGuCGUCGUUGUCG---CCg -5'
10699 3' -56.8 NC_002794.1 + 138134 0.72 0.619843
Target:  5'- cGCcgGUCuCGGGCGGCGGUuucuugcGCAGcCGGCa -3'
miRNA:   3'- -UGa-CAG-GCUCGUCGUCGu------UGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 9095 0.72 0.589553
Target:  5'- gGCga-CCGGG-AGCAGCAACAGCaGCa -3'
miRNA:   3'- -UGacaGGCUCgUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 91644 0.72 0.609727
Target:  5'- cCUGUCCGAGCugaAGCuGCAcCuGuCGGCg -3'
miRNA:   3'- uGACAGGCUCG---UCGuCGUuGuC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 114705 0.72 0.579508
Target:  5'- cCUGcgagaCGGaCGGCGGCGGCGGCGGCu -3'
miRNA:   3'- uGACag---GCUcGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92311 0.72 0.588547
Target:  5'- gGCUGggCgCGGGCGGCGGgGGCccgggcgGGCGGCu -3'
miRNA:   3'- -UGACa-G-GCUCGUCGUCgUUG-------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 113639 0.72 0.573498
Target:  5'- --cGUCuCGAGCAGCGGCccGGCGuccucggcguccagcGCGGCg -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCG--UUGU---------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129931 0.72 0.589553
Target:  5'- --aGgCCGuGGCgacGGCGGCGGCGGCGGCu -3'
miRNA:   3'- ugaCaGGC-UCG---UCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94141 0.72 0.609727
Target:  5'- --gGUCCGAccGCGGCGGCGcuggACGGUGGg -3'
miRNA:   3'- ugaCAGGCU--CGUCGUCGU----UGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 23997 0.72 0.573498
Target:  5'- cGCUccGUCCGAcgggccgccgucaccGCGGCgccucGGCGACGGCGGUc -3'
miRNA:   3'- -UGA--CAGGCU---------------CGUCG-----UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 76784 0.71 0.629968
Target:  5'- --aGUCCGAGCcgGGCgGGCG--AGCGGCg -3'
miRNA:   3'- ugaCAGGCUCG--UCG-UCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 67015 0.71 0.629968
Target:  5'- --aGUCCG-GCGGCGGCGGC--CGGCu -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGUUGucGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94036 0.71 0.66032
Target:  5'- gGCggGcCCGAgaGCGGCGGCGguGCGGgGGCg -3'
miRNA:   3'- -UGa-CaGGCU--CGUCGUCGU--UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 123303 0.71 0.66032
Target:  5'- uGCUGgaggagaucUUCGAGCAGCAGgGGCcgcagcugggGGUGGCg -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGUCgUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 86979 0.71 0.66032
Target:  5'- aGCUGcgaCGAGgucCGGCGGCuuuCGGCGGCg -3'
miRNA:   3'- -UGACag-GCUC---GUCGUCGuu-GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 117833 0.71 0.66032
Target:  5'- --gGUCgcaGAGCAGCGGCAcggagcgcgACGGgGGCu -3'
miRNA:   3'- ugaCAGg--CUCGUCGUCGU---------UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 92523 0.71 0.65729
Target:  5'- -gUGUCCGAGguGCGcaugaaguccaaccGCGACgaGGUGGCc -3'
miRNA:   3'- ugACAGGCUCguCGU--------------CGUUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 32836 0.71 0.650214
Target:  5'- cGCgg-CCGGcucauCGGUAGCGGCAGCGGCc -3'
miRNA:   3'- -UGacaGGCUc----GUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 112639 0.71 0.650214
Target:  5'- gGCUucUCGAGCAGCAgGCAgaggcucucGCAgGCGGCg -3'
miRNA:   3'- -UGAcaGGCUCGUCGU-CGU---------UGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 110249 0.71 0.640094
Target:  5'- gGCggagGUuucCCGcGCGGCGucGCGACGGCGGCc -3'
miRNA:   3'- -UGa---CA---GGCuCGUCGU--CGUUGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.