miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 130448 0.69 0.777405
Target:  5'- --cGUCCGuGUugGGCGGCGAggcgcUGGCGGCu -3'
miRNA:   3'- ugaCAGGCuCG--UCGUCGUU-----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 126374 0.69 0.776483
Target:  5'- cGCUGcgugggcgCCGGggccugcGCGGCGGCGugcGCGGCGGUc -3'
miRNA:   3'- -UGACa-------GGCU-------CGUCGUCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 88169 0.69 0.777405
Target:  5'- cACaGUCCGGGCAGaAGCAGaaaagGGgGGCu -3'
miRNA:   3'- -UGaCAGGCUCGUCgUCGUUg----UCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 66040 0.69 0.777405
Target:  5'- --cGUCguCGGGC--CGGCAGCGGCGGCc -3'
miRNA:   3'- ugaCAG--GCUCGucGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 50023 0.69 0.776483
Target:  5'- uCUGcUUGAGCAGCGcguccucGCGcuuGCGGCGGCu -3'
miRNA:   3'- uGACaGGCUCGUCGU-------CGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 104462 0.69 0.774637
Target:  5'- --aGcCCGGGCGGCgugugcaggaugcgGGCGgccACGGCGGCc -3'
miRNA:   3'- ugaCaGGCUCGUCG--------------UCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 16850 0.69 0.768136
Target:  5'- -------cAGCAGCAGCAGCAGCaGCa -3'
miRNA:   3'- ugacaggcUCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 184571 0.69 0.739656
Target:  5'- cGCgccgCCGcGGCGGCGGCGGCcacgcGCGGCc -3'
miRNA:   3'- -UGaca-GGC-UCGUCGUCGUUGu----CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 112853 0.69 0.777405
Target:  5'- gGCgcgCCGcAGCAGCuGCuGCAGCGcGCc -3'
miRNA:   3'- -UGacaGGC-UCGUCGuCGuUGUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 95006 0.69 0.75875
Target:  5'- uGCUGUCgcugaugGGGCGGCuguGCGGCaucucgccgguGGCGGCg -3'
miRNA:   3'- -UGACAGg------CUCGUCGu--CGUUG-----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 29939 0.69 0.75875
Target:  5'- cGCcGUCCGGGaAGCGGCAccuaGCAGaCGGa -3'
miRNA:   3'- -UGaCAGGCUCgUCGUCGU----UGUC-GCCg -5'
10699 3' -56.8 NC_002794.1 + 149272 0.69 0.768136
Target:  5'- --cGUCCccGcCGGCGGC-GCGGCGGCu -3'
miRNA:   3'- ugaCAGGcuC-GUCGUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100818 0.69 0.768136
Target:  5'- --cGUgCCGGGCGGCGGgggcCGGCAGCcgGGCu -3'
miRNA:   3'- ugaCA-GGCUCGUCGUC----GUUGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 144546 0.68 0.803532
Target:  5'- aACUGUCgGAggacgugauGCAGCgguacguguaccaGGCcaucGACGGCGGCu -3'
miRNA:   3'- -UGACAGgCU---------CGUCG-------------UCG----UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 141337 0.68 0.813119
Target:  5'- -gUGg-CGAGCgaagacgagAGCAGCGACgagAGCGGCg -3'
miRNA:   3'- ugACagGCUCG---------UCGUCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 190425 0.68 0.807913
Target:  5'- --aGUCCaccAGCAGCAGguGCGacacgaaauacgugcGCGGCg -3'
miRNA:   3'- ugaCAGGc--UCGUCGUCguUGU---------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 195206 0.68 0.807913
Target:  5'- --gGUCCagccccgccagcuGCGGCAGCAGCccgcGCGGCg -3'
miRNA:   3'- ugaCAGGcu-----------CGUCGUCGUUGu---CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 93827 0.68 0.804411
Target:  5'- aGCUGgcggccaucgCCGAGaucauGGaCGGCcGCGGCGGCg -3'
miRNA:   3'- -UGACa---------GGCUCg----UC-GUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122418 0.68 0.804411
Target:  5'- -gUGUUCGAGCAGUaccuGGaCGACcuguacagcgAGCGGCu -3'
miRNA:   3'- ugACAGGCUCGUCG----UC-GUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 120986 0.68 0.795551
Target:  5'- --aGUUCGuGUAGCGGCGGCGGgccaUGGCc -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGUUGUC----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.