miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 180744 0.74 0.48204
Target:  5'- cGCcGUCCGGcuccuCGGCGGCuuCGGCGGCa -3'
miRNA:   3'- -UGaCAGGCUc----GUCGUCGuuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 184050 0.74 0.48204
Target:  5'- cGCgGUCgCGGGCcGCGGCGA-AGCGGCa -3'
miRNA:   3'- -UGaCAG-GCUCGuCGUCGUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 143289 0.74 0.48204
Target:  5'- cGCUcGgggUCGGGCGGguGCAGC-GCGGCg -3'
miRNA:   3'- -UGA-Ca--GGCUCGUCguCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 184972 0.74 0.48204
Target:  5'- cGCUcgUCGGGCAGCAcGCAGCgcgcgaAGCGGCg -3'
miRNA:   3'- -UGAcaGGCUCGUCGU-CGUUG------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 56141 0.74 0.48204
Target:  5'- aGCgUGUCguacggCGuGCcGCAGCGGCAGCGGCc -3'
miRNA:   3'- -UG-ACAG------GCuCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 103793 0.74 0.491463
Target:  5'- gGCUGagcUUGAGguGCGccuGCGACGGCGGCg -3'
miRNA:   3'- -UGACa--GGCUCguCGU---CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55270 0.74 0.491463
Target:  5'- --aG-CCGGGgGGCGGCggUGGCGGCg -3'
miRNA:   3'- ugaCaGGCUCgUCGUCGuuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 117060 0.74 0.500971
Target:  5'- gGCcGUCCguGAGCcucgGGUacGGCGGCAGCGGCg -3'
miRNA:   3'- -UGaCAGG--CUCG----UCG--UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 188773 0.74 0.500971
Target:  5'- aACaGcCCGGuGCAGCGGUAGCGGcCGGCc -3'
miRNA:   3'- -UGaCaGGCU-CGUCGUCGUUGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 125535 0.74 0.500971
Target:  5'- gGCgaa-CGAGC-GCGGCGGCAGCGGUu -3'
miRNA:   3'- -UGacagGCUCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 101499 0.73 0.520222
Target:  5'- gGCcgGUCCGAGCGguGCGGCAcACGcCGGCg -3'
miRNA:   3'- -UGa-CAGGCUCGU--CGUCGU-UGUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 130322 0.73 0.529957
Target:  5'- cCUGgCCGAGaCGGCGGaCGAaGGCGGCg -3'
miRNA:   3'- uGACaGGCUC-GUCGUC-GUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 21893 0.73 0.53681
Target:  5'- -gUGUCCGcggccugcgucgguGGUGGCGGCGgagacgACGGCGGCg -3'
miRNA:   3'- ugACAGGC--------------UCGUCGUCGU------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 46309 0.73 0.539757
Target:  5'- ---uUCCGAGCgcGGCGGCGACGGCGcCg -3'
miRNA:   3'- ugacAGGCUCG--UCGUCGUUGUCGCcG- -5'
10699 3' -56.8 NC_002794.1 + 60598 0.73 0.549618
Target:  5'- uGCUGga-GGcGCAGCAGCAACAGCagaaccggacgGGCg -3'
miRNA:   3'- -UGACaggCU-CGUCGUCGUUGUCG-----------CCG- -5'
10699 3' -56.8 NC_002794.1 + 23904 0.73 0.559534
Target:  5'- --gGgagCCGAguGCAGCAGCGugGGCGaGCg -3'
miRNA:   3'- ugaCa--GGCU--CGUCGUCGUugUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 91202 0.73 0.559534
Target:  5'- cGCUGUUCGcGGaCGGCGacGCGACGGCGGa -3'
miRNA:   3'- -UGACAGGC-UC-GUCGU--CGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 94460 0.73 0.559534
Target:  5'- --aGUCgGuGGCGaCGGCAACGGCGGCg -3'
miRNA:   3'- ugaCAGgC-UCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 113639 0.72 0.573498
Target:  5'- --cGUCuCGAGCAGCGGCccGGCGuccucggcguccagcGCGGCg -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCG--UUGU---------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 23997 0.72 0.573498
Target:  5'- cGCUccGUCCGAcgggccgccgucaccGCGGCgccucGGCGACGGCGGUc -3'
miRNA:   3'- -UGA--CAGGCU---------------CGUCG-----UCGUUGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.