miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 32836 0.71 0.650214
Target:  5'- cGCgg-CCGGcucauCGGUAGCGGCAGCGGCc -3'
miRNA:   3'- -UGacaGGCUc----GUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92523 0.71 0.65729
Target:  5'- -gUGUCCGAGguGCGcaugaaguccaaccGCGACgaGGUGGCc -3'
miRNA:   3'- ugACAGGCUCguCGU--------------CGUUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 123303 0.71 0.66032
Target:  5'- uGCUGgaggagaucUUCGAGCAGCAGgGGCcgcagcugggGGUGGCg -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGUCgUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 86979 0.71 0.66032
Target:  5'- aGCUGcgaCGAGgucCGGCGGCuuuCGGCGGCg -3'
miRNA:   3'- -UGACag-GCUC---GUCGUCGuu-GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 117833 0.71 0.66032
Target:  5'- --gGUCgcaGAGCAGCGGCAcggagcgcgACGGgGGCu -3'
miRNA:   3'- ugaCAGg--CUCGUCGUCGU---------UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 94036 0.71 0.66032
Target:  5'- gGCggGcCCGAgaGCGGCGGCGguGCGGgGGCg -3'
miRNA:   3'- -UGa-CaGGCU--CGUCGUCGU--UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 114179 0.7 0.680457
Target:  5'- aGCUGguuggCCaGGcGCAGCGGCGccACGGcCGGCg -3'
miRNA:   3'- -UGACa----GG-CU-CGUCGUCGU--UGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 116944 0.7 0.680457
Target:  5'- --cGUCCccGGCGGCGGCGuCGGCGGg -3'
miRNA:   3'- ugaCAGGc-UCGUCGUCGUuGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 184351 0.7 0.680457
Target:  5'- --gGUCCGcagcucGCAGCGGCGcucccaGCAGCGGa -3'
miRNA:   3'- ugaCAGGCu-----CGUCGUCGU------UGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 115565 0.7 0.690472
Target:  5'- --aG-CCGAGCAGCucGGCGAacgggacgUAGCGGCu -3'
miRNA:   3'- ugaCaGGCUCGUCG--UCGUU--------GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 65232 0.7 0.690472
Target:  5'- -----aCGGGCGGCGGUcgccGCGGCGGCg -3'
miRNA:   3'- ugacagGCUCGUCGUCGu---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 56270 0.7 0.690472
Target:  5'- ----aCCGGGCcgAGCAGCA--GGCGGCa -3'
miRNA:   3'- ugacaGGCUCG--UCGUCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 146976 0.7 0.699444
Target:  5'- cCUGUCgCGAGgucggcgccgcCGGCcgacgucGGCGGCGGCGGCc -3'
miRNA:   3'- uGACAG-GCUC-----------GUCG-------UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100096 0.7 0.700439
Target:  5'- --cGUCCGcguGCGGC-GCGuGCAGCGGUg -3'
miRNA:   3'- ugaCAGGCu--CGUCGuCGU-UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 21659 0.7 0.700439
Target:  5'- -----gCG-GCGGCGGUGGCGGCGGCg -3'
miRNA:   3'- ugacagGCuCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 67205 0.7 0.700439
Target:  5'- --cGUCCGGGCGGUgcgcucGGCGcCGgGCGGCu -3'
miRNA:   3'- ugaCAGGCUCGUCG------UCGUuGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 23960 0.7 0.700439
Target:  5'- cUUGgcUCCGAGcCAGCGGCGAgGcCGGCg -3'
miRNA:   3'- uGAC--AGGCUC-GUCGUCGUUgUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 18681 0.7 0.700439
Target:  5'- gGCUGccgccgccgucUCCG-GCA-CGGCGGCGGCGGUc -3'
miRNA:   3'- -UGAC-----------AGGCuCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 179957 0.7 0.71035
Target:  5'- --gGagCGAGCGaCAGCAGgAGCGGCa -3'
miRNA:   3'- ugaCagGCUCGUcGUCGUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 115045 0.7 0.71035
Target:  5'- uGCga-CCGGGCGGCgGGCGGCAGCGcCg -3'
miRNA:   3'- -UGacaGGCUCGUCG-UCGUUGUCGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.