Results 101 - 120 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 179957 | 0.7 | 0.71035 |
Target: 5'- --gGagCGAGCGaCAGCAGgAGCGGCa -3' miRNA: 3'- ugaCagGCUCGUcGUCGUUgUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 180775 | 0.7 | 0.71035 |
Target: 5'- aACUGUCCGGGCGGUGGC--CGG-GGa -3' miRNA: 3'- -UGACAGGCUCGUCGUCGuuGUCgCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 75367 | 0.7 | 0.720195 |
Target: 5'- ----aCCGAcccgccGCGGcCGGCGGCGGCGGCc -3' miRNA: 3'- ugacaGGCU------CGUC-GUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 54976 | 0.7 | 0.720195 |
Target: 5'- cUUG-CaCGAcccGCcGCGGCGACGGCGGCg -3' miRNA: 3'- uGACaG-GCU---CGuCGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 100538 | 0.7 | 0.720195 |
Target: 5'- ----aCCGAGgAGCAGCG--GGCGGCc -3' miRNA: 3'- ugacaGGCUCgUCGUCGUugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 55297 | 0.7 | 0.720195 |
Target: 5'- ------aGGGCGGCGGCGGCGucGCGGCg -3' miRNA: 3'- ugacaggCUCGUCGUCGUUGU--CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 192028 | 0.7 | 0.729967 |
Target: 5'- uGCUGUUUcuGUGGCGGCGGCGGCuGCu -3' miRNA: 3'- -UGACAGGcuCGUCGUCGUUGUCGcCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 182526 | 0.69 | 0.739656 |
Target: 5'- cACcGUCCaccagcGCGGCAGCGACugcgccGCGGCc -3' miRNA: 3'- -UGaCAGGcu----CGUCGUCGUUGu-----CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 49796 | 0.69 | 0.739656 |
Target: 5'- cACgagCCGAGcCAGgAGCAGCucccGCGGCc -3' miRNA: 3'- -UGacaGGCUC-GUCgUCGUUGu---CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 184571 | 0.69 | 0.739656 |
Target: 5'- cGCgccgCCGcGGCGGCGGCGGCcacgcGCGGCc -3' miRNA: 3'- -UGaca-GGC-UCGUCGUCGUUGu----CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 58051 | 0.69 | 0.749253 |
Target: 5'- --cGUCCccGuCGGCGGCcccGGCGGCGGCg -3' miRNA: 3'- ugaCAGGcuC-GUCGUCG---UUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 95006 | 0.69 | 0.75875 |
Target: 5'- uGCUGUCgcugaugGGGCGGCuguGCGGCaucucgccgguGGCGGCg -3' miRNA: 3'- -UGACAGg------CUCGUCGu--CGUUG-----------UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 29939 | 0.69 | 0.75875 |
Target: 5'- cGCcGUCCGGGaAGCGGCAccuaGCAGaCGGa -3' miRNA: 3'- -UGaCAGGCUCgUCGUCGU----UGUC-GCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 149272 | 0.69 | 0.768136 |
Target: 5'- --cGUCCccGcCGGCGGC-GCGGCGGCu -3' miRNA: 3'- ugaCAGGcuC-GUCGUCGuUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 100818 | 0.69 | 0.768136 |
Target: 5'- --cGUgCCGGGCGGCGGgggcCGGCAGCcgGGCu -3' miRNA: 3'- ugaCA-GGCUCGUCGUC----GUUGUCG--CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 16850 | 0.69 | 0.768136 |
Target: 5'- -------cAGCAGCAGCAGCAGCaGCa -3' miRNA: 3'- ugacaggcUCGUCGUCGUUGUCGcCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 104462 | 0.69 | 0.774637 |
Target: 5'- --aGcCCGGGCGGCgugugcaggaugcgGGCGgccACGGCGGCc -3' miRNA: 3'- ugaCaGGCUCGUCG--------------UCGU---UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 50023 | 0.69 | 0.776483 |
Target: 5'- uCUGcUUGAGCAGCGcguccucGCGcuuGCGGCGGCu -3' miRNA: 3'- uGACaGGCUCGUCGU-------CGU---UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 126374 | 0.69 | 0.776483 |
Target: 5'- cGCUGcgugggcgCCGGggccugcGCGGCGGCGugcGCGGCGGUc -3' miRNA: 3'- -UGACa-------GGCU-------CGUCGUCGU---UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 66040 | 0.69 | 0.777405 |
Target: 5'- --cGUCguCGGGC--CGGCAGCGGCGGCc -3' miRNA: 3'- ugaCAG--GCUCGucGUCGUUGUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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