miRNA display CGI


Results 141 - 160 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 193000 0.68 0.813119
Target:  5'- --cGcCCG-GCGuguGCAGCGcCAGCGGCg -3'
miRNA:   3'- ugaCaGGCuCGU---CGUCGUuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 147965 0.68 0.813119
Target:  5'- ---cUCCGAGC-GCGuGCAGCGuGUGGCg -3'
miRNA:   3'- ugacAGGCUCGuCGU-CGUUGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 65132 0.68 0.813119
Target:  5'- cCUGUCCGAGCuccuCGGCGACuG-GGUc -3'
miRNA:   3'- uGACAGGCUCGuc--GUCGUUGuCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 91577 0.68 0.813119
Target:  5'- cGCUGaugaacuacUCCGAGUGGCcGCugguGCGcGCGGCc -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGuCGu---UGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 105521 0.68 0.813119
Target:  5'- cGCcGUCCGaAGCGGacgugagaucCGGCGGCGGCucgGGCg -3'
miRNA:   3'- -UGaCAGGC-UCGUC----------GUCGUUGUCG---CCG- -5'
10699 3' -56.8 NC_002794.1 + 44234 0.68 0.813119
Target:  5'- gGCUcGgugCCGGGCGGCucGguGCcgGGCGGCu -3'
miRNA:   3'- -UGA-Ca--GGCUCGUCGu-CguUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 65956 0.68 0.813119
Target:  5'- --cGUCgCGAGCGGCGGCGucuccucCGGCa -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCGUuguc---GCCG- -5'
10699 3' -56.8 NC_002794.1 + 128138 0.68 0.813119
Target:  5'- --cGUgCGAGgaagaAGCGacGCGACGGCGGCu -3'
miRNA:   3'- ugaCAgGCUCg----UCGU--CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 40466 0.68 0.813119
Target:  5'- cGCUGUCCcuucGGGCGGCucaucgAACGGcCGGCg -3'
miRNA:   3'- -UGACAGG----CUCGUCGucg---UUGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 141337 0.68 0.813119
Target:  5'- -gUGg-CGAGCgaagacgagAGCAGCGACgagAGCGGCg -3'
miRNA:   3'- ugACagGCUCG---------UCGUCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 44053 0.68 0.821666
Target:  5'- --gGUCC--GCGGCAGCGACAGaaGCc -3'
miRNA:   3'- ugaCAGGcuCGUCGUCGUUGUCgcCG- -5'
10699 3' -56.8 NC_002794.1 + 43005 0.68 0.825038
Target:  5'- cACcgGUCCGAGUAGCuccGCAGgucgucggccuccauCGcGCGGCa -3'
miRNA:   3'- -UGa-CAGGCUCGUCGu--CGUU---------------GU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 63436 0.68 0.829214
Target:  5'- --cGcCCGAcaccaccacggccGCGGCGGCGACgaugacgacgaGGCGGCg -3'
miRNA:   3'- ugaCaGGCU-------------CGUCGUCGUUG-----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 46757 0.68 0.830044
Target:  5'- cGCUGgaUCGA-CGGCgacuucgaccccAGCGGCGGCGGCg -3'
miRNA:   3'- -UGACa-GGCUcGUCG------------UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 49006 0.68 0.830044
Target:  5'- aGCUcucCCGcGCcGCGGCGGCcGCGGCg -3'
miRNA:   3'- -UGAca-GGCuCGuCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 66734 0.68 0.830044
Target:  5'- ----aCCGc-CGGCGGUGGCGGCGGCg -3'
miRNA:   3'- ugacaGGCucGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122171 0.68 0.830044
Target:  5'- cCUGgCCGAGCacGGCGcgcgcguguGCGAC-GCGGCg -3'
miRNA:   3'- uGACaGGCUCG--UCGU---------CGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55358 0.67 0.838246
Target:  5'- gGCgg-CCGAgGCGGCcgaGGCGGCcgaGGCGGCc -3'
miRNA:   3'- -UGacaGGCU-CGUCG---UCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 114521 0.67 0.846264
Target:  5'- aGCgagUCGAGCGGCAGCcGC-GCGaGCu -3'
miRNA:   3'- -UGacaGGCUCGUCGUCGuUGuCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 50127 0.67 0.846264
Target:  5'- aGCUGUCCGA-UGGU--CGACAGCGGg -3'
miRNA:   3'- -UGACAGGCUcGUCGucGUUGUCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.