miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 128138 0.68 0.813119
Target:  5'- --cGUgCGAGgaagaAGCGacGCGACGGCGGCu -3'
miRNA:   3'- ugaCAgGCUCg----UCGU--CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 65956 0.68 0.813119
Target:  5'- --cGUCgCGAGCGGCGGCGucuccucCGGCa -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCGUuguc---GCCG- -5'
10699 3' -56.8 NC_002794.1 + 65132 0.68 0.813119
Target:  5'- cCUGUCCGAGCuccuCGGCGACuG-GGUc -3'
miRNA:   3'- uGACAGGCUCGuc--GUCGUUGuCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 44234 0.68 0.813119
Target:  5'- gGCUcGgugCCGGGCGGCucGguGCcgGGCGGCu -3'
miRNA:   3'- -UGA-Ca--GGCUCGUCGu-CguUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 105521 0.68 0.813119
Target:  5'- cGCcGUCCGaAGCGGacgugagaucCGGCGGCGGCucgGGCg -3'
miRNA:   3'- -UGaCAGGC-UCGUC----------GUCGUUGUCG---CCG- -5'
10699 3' -56.8 NC_002794.1 + 91577 0.68 0.813119
Target:  5'- cGCUGaugaacuacUCCGAGUGGCcGCugguGCGcGCGGCc -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGuCGu---UGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 40466 0.68 0.813119
Target:  5'- cGCUGUCCcuucGGGCGGCucaucgAACGGcCGGCg -3'
miRNA:   3'- -UGACAGG----CUCGUCGucg---UUGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 193000 0.68 0.813119
Target:  5'- --cGcCCG-GCGuguGCAGCGcCAGCGGCg -3'
miRNA:   3'- ugaCaGGCuCGU---CGUCGUuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 195206 0.68 0.807913
Target:  5'- --gGUCCagccccgccagcuGCGGCAGCAGCccgcGCGGCg -3'
miRNA:   3'- ugaCAGGcu-----------CGUCGUCGUUGu---CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 190425 0.68 0.807913
Target:  5'- --aGUCCaccAGCAGCAGguGCGacacgaaauacgugcGCGGCg -3'
miRNA:   3'- ugaCAGGc--UCGUCGUCguUGU---------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 93827 0.68 0.804411
Target:  5'- aGCUGgcggccaucgCCGAGaucauGGaCGGCcGCGGCGGCg -3'
miRNA:   3'- -UGACa---------GGCUCg----UC-GUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122418 0.68 0.804411
Target:  5'- -gUGUUCGAGCAGUaccuGGaCGACcuguacagcgAGCGGCu -3'
miRNA:   3'- ugACAGGCUCGUCG----UC-GUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 29204 0.68 0.804411
Target:  5'- --cGUCCGucCGGCGGU--CGGCGGCc -3'
miRNA:   3'- ugaCAGGCucGUCGUCGuuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 144546 0.68 0.803532
Target:  5'- aACUGUCgGAggacgugauGCAGCgguacguguaccaGGCcaucGACGGCGGCu -3'
miRNA:   3'- -UGACAGgCU---------CGUCG-------------UCG----UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 120986 0.68 0.795551
Target:  5'- --aGUUCGuGUAGCGGCGGCGGgccaUGGCc -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGUUGUC----GCCG- -5'
10699 3' -56.8 NC_002794.1 + 65923 0.69 0.786545
Target:  5'- --cGUCgCcGGCGGCGGUGGCgucGGCGGCg -3'
miRNA:   3'- ugaCAG-GcUCGUCGUCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 193075 0.69 0.786545
Target:  5'- gGCcGUCgCGGGaCAGCcGCAGCAGCGuCg -3'
miRNA:   3'- -UGaCAG-GCUC-GUCGuCGUUGUCGCcG- -5'
10699 3' -56.8 NC_002794.1 + 145921 0.69 0.786545
Target:  5'- cGCg--CCGAGCGGaggggcCGGCGAgAGCGGUu -3'
miRNA:   3'- -UGacaGGCUCGUC------GUCGUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 137604 0.69 0.786545
Target:  5'- cGCcG-CCG-GCGGUcGCGGCGGCGGUg -3'
miRNA:   3'- -UGaCaGGCuCGUCGuCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 194129 0.69 0.786545
Target:  5'- cACgg-CUGAgGCAGCGGCcGCAGCaGCg -3'
miRNA:   3'- -UGacaGGCU-CGUCGUCGuUGUCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.