miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 127195 0.69 0.785637
Target:  5'- cGCgg-CCGcAGCcGCAGCAGCAGCcucaaccccagcaGGCg -3'
miRNA:   3'- -UGacaGGC-UCGuCGUCGUUGUCG-------------CCG- -5'
10699 3' -56.8 NC_002794.1 + 66040 0.69 0.777405
Target:  5'- --cGUCguCGGGC--CGGCAGCGGCGGCc -3'
miRNA:   3'- ugaCAG--GCUCGucGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 88169 0.69 0.777405
Target:  5'- cACaGUCCGGGCAGaAGCAGaaaagGGgGGCu -3'
miRNA:   3'- -UGaCAGGCUCGUCgUCGUUg----UCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 112853 0.69 0.777405
Target:  5'- gGCgcgCCGcAGCAGCuGCuGCAGCGcGCc -3'
miRNA:   3'- -UGacaGGC-UCGUCGuCGuUGUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 189313 0.69 0.777405
Target:  5'- uGCaGUUCGGGCAGCuggucggggGGCAGCAGCu-- -3'
miRNA:   3'- -UGaCAGGCUCGUCG---------UCGUUGUCGccg -5'
10699 3' -56.8 NC_002794.1 + 130448 0.69 0.777405
Target:  5'- --cGUCCGuGUugGGCGGCGAggcgcUGGCGGCu -3'
miRNA:   3'- ugaCAGGCuCG--UCGUCGUU-----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 187224 0.69 0.777405
Target:  5'- aGCgGcUCCGgcuGGCcGCAGCAcagAUAGCGGCu -3'
miRNA:   3'- -UGaC-AGGC---UCGuCGUCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 139607 0.69 0.777405
Target:  5'- aACgGUcgaCCGAGauCAGC-GCGACGGUGGCg -3'
miRNA:   3'- -UGaCA---GGCUC--GUCGuCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 190966 0.69 0.777405
Target:  5'- aGCgccUCgGGGCAGCAGagcaGGCAgcGCGGCg -3'
miRNA:   3'- -UGac-AGgCUCGUCGUCg---UUGU--CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 126374 0.69 0.776483
Target:  5'- cGCUGcgugggcgCCGGggccugcGCGGCGGCGugcGCGGCGGUc -3'
miRNA:   3'- -UGACa-------GGCU-------CGUCGUCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 50023 0.69 0.776483
Target:  5'- uCUGcUUGAGCAGCGcguccucGCGcuuGCGGCGGCu -3'
miRNA:   3'- uGACaGGCUCGUCGU-------CGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 104462 0.69 0.774637
Target:  5'- --aGcCCGGGCGGCgugugcaggaugcgGGCGgccACGGCGGCc -3'
miRNA:   3'- ugaCaGGCUCGUCG--------------UCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 149272 0.69 0.768136
Target:  5'- --cGUCCccGcCGGCGGC-GCGGCGGCu -3'
miRNA:   3'- ugaCAGGcuC-GUCGUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100818 0.69 0.768136
Target:  5'- --cGUgCCGGGCGGCGGgggcCGGCAGCcgGGCu -3'
miRNA:   3'- ugaCA-GGCUCGUCGUC----GUUGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 16850 0.69 0.768136
Target:  5'- -------cAGCAGCAGCAGCAGCaGCa -3'
miRNA:   3'- ugacaggcUCGUCGUCGUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 29939 0.69 0.75875
Target:  5'- cGCcGUCCGGGaAGCGGCAccuaGCAGaCGGa -3'
miRNA:   3'- -UGaCAGGCUCgUCGUCGU----UGUC-GCCg -5'
10699 3' -56.8 NC_002794.1 + 95006 0.69 0.75875
Target:  5'- uGCUGUCgcugaugGGGCGGCuguGCGGCaucucgccgguGGCGGCg -3'
miRNA:   3'- -UGACAGg------CUCGUCGu--CGUUG-----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 58051 0.69 0.749253
Target:  5'- --cGUCCccGuCGGCGGCcccGGCGGCGGCg -3'
miRNA:   3'- ugaCAGGcuC-GUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 182526 0.69 0.739656
Target:  5'- cACcGUCCaccagcGCGGCAGCGACugcgccGCGGCc -3'
miRNA:   3'- -UGaCAGGcu----CGUCGUCGUUGu-----CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 49796 0.69 0.739656
Target:  5'- cACgagCCGAGcCAGgAGCAGCucccGCGGCc -3'
miRNA:   3'- -UGacaGGCUC-GUCgUCGUUGu---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.