Results 141 - 160 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 184351 | 0.7 | 0.680457 |
Target: 5'- --gGUCCGcagcucGCAGCGGCGcucccaGCAGCGGa -3' miRNA: 3'- ugaCAGGCu-----CGUCGUCGU------UGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 114179 | 0.7 | 0.680457 |
Target: 5'- aGCUGguuggCCaGGcGCAGCGGCGccACGGcCGGCg -3' miRNA: 3'- -UGACa----GG-CU-CGUCGUCGU--UGUC-GCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 117833 | 0.71 | 0.66032 |
Target: 5'- --gGUCgcaGAGCAGCGGCAcggagcgcgACGGgGGCu -3' miRNA: 3'- ugaCAGg--CUCGUCGUCGU---------UGUCgCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 86979 | 0.71 | 0.66032 |
Target: 5'- aGCUGcgaCGAGgucCGGCGGCuuuCGGCGGCg -3' miRNA: 3'- -UGACag-GCUC---GUCGUCGuu-GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 123303 | 0.71 | 0.66032 |
Target: 5'- uGCUGgaggagaucUUCGAGCAGCAGgGGCcgcagcugggGGUGGCg -3' miRNA: 3'- -UGAC---------AGGCUCGUCGUCgUUG----------UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 94036 | 0.71 | 0.66032 |
Target: 5'- gGCggGcCCGAgaGCGGCGGCGguGCGGgGGCg -3' miRNA: 3'- -UGa-CaGGCU--CGUCGUCGU--UGUCgCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 92523 | 0.71 | 0.65729 |
Target: 5'- -gUGUCCGAGguGCGcaugaaguccaaccGCGACgaGGUGGCc -3' miRNA: 3'- ugACAGGCUCguCGU--------------CGUUG--UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 32836 | 0.71 | 0.650214 |
Target: 5'- cGCgg-CCGGcucauCGGUAGCGGCAGCGGCc -3' miRNA: 3'- -UGacaGGCUc----GUCGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 112639 | 0.71 | 0.650214 |
Target: 5'- gGCUucUCGAGCAGCAgGCAgaggcucucGCAgGCGGCg -3' miRNA: 3'- -UGAcaGGCUCGUCGU-CGU---------UGU-CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 32913 | 0.71 | 0.650214 |
Target: 5'- --aGU-CGGGCGGCAGCAGguCGGCGGg -3' miRNA: 3'- ugaCAgGCUCGUCGUCGUU--GUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 136629 | 0.71 | 0.640094 |
Target: 5'- --gGUCUG-GCAGCGGCu-CAGgGGCa -3' miRNA: 3'- ugaCAGGCuCGUCGUCGuuGUCgCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 62050 | 0.71 | 0.640094 |
Target: 5'- cCUGUcgguggCCGAcGcCGGCGGCGACgccGGCGGCg -3' miRNA: 3'- uGACA------GGCU-C-GUCGUCGUUG---UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 31051 | 0.71 | 0.640094 |
Target: 5'- ------aGGGCAGCGGC-ACGGCGGCc -3' miRNA: 3'- ugacaggCUCGUCGUCGuUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 110249 | 0.71 | 0.640094 |
Target: 5'- gGCggagGUuucCCGcGCGGCGucGCGACGGCGGCc -3' miRNA: 3'- -UGa---CA---GGCuCGUCGU--CGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 108436 | 0.71 | 0.629968 |
Target: 5'- cGCga-CCG-GCGGCAcucGCGGCGGCGGCc -3' miRNA: 3'- -UGacaGGCuCGUCGU---CGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 142227 | 0.71 | 0.629968 |
Target: 5'- --gGUgCGGGgAGCGGCGgagGCGGCGGUg -3' miRNA: 3'- ugaCAgGCUCgUCGUCGU---UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 67015 | 0.71 | 0.629968 |
Target: 5'- --aGUCCG-GCGGCGGCGGC--CGGCu -3' miRNA: 3'- ugaCAGGCuCGUCGUCGUUGucGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 76784 | 0.71 | 0.629968 |
Target: 5'- --aGUCCGAGCcgGGCgGGCG--AGCGGCg -3' miRNA: 3'- ugaCAGGCUCG--UCG-UCGUugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 138134 | 0.72 | 0.619843 |
Target: 5'- cGCcgGUCuCGGGCGGCGGUuucuugcGCAGcCGGCa -3' miRNA: 3'- -UGa-CAG-GCUCGUCGUCGu------UGUC-GCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 183394 | 0.72 | 0.619843 |
Target: 5'- --cG-CCGAGCuGCAGCAACAGCcacGGg -3' miRNA: 3'- ugaCaGGCUCGuCGUCGUUGUCG---CCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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