Results 161 - 180 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 183394 | 0.72 | 0.619843 |
Target: 5'- --cG-CCGAGCuGCAGCAACAGCcacGGg -3' miRNA: 3'- ugaCaGGCUCGuCGUCGUUGUCG---CCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 94141 | 0.72 | 0.609727 |
Target: 5'- --gGUCCGAccGCGGCGGCGcuggACGGUGGg -3' miRNA: 3'- ugaCAGGCU--CGUCGUCGU----UGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 91644 | 0.72 | 0.609727 |
Target: 5'- cCUGUCCGAGCugaAGCuGCAcCuGuCGGCg -3' miRNA: 3'- uGACAGGCUCG---UCGuCGUuGuC-GCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 37430 | 0.72 | 0.589553 |
Target: 5'- cGCcGUCCGcAGCAGCAGCAcGCAcUGGUc -3' miRNA: 3'- -UGaCAGGC-UCGUCGUCGU-UGUcGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 9095 | 0.72 | 0.589553 |
Target: 5'- gGCga-CCGGG-AGCAGCAACAGCaGCa -3' miRNA: 3'- -UGacaGGCUCgUCGUCGUUGUCGcCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 129931 | 0.72 | 0.589553 |
Target: 5'- --aGgCCGuGGCgacGGCGGCGGCGGCGGCu -3' miRNA: 3'- ugaCaGGC-UCG---UCGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 92311 | 0.72 | 0.588547 |
Target: 5'- gGCUGggCgCGGGCGGCGGgGGCccgggcgGGCGGCu -3' miRNA: 3'- -UGACa-G-GCUCGUCGUCgUUG-------UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 114705 | 0.72 | 0.579508 |
Target: 5'- cCUGcgagaCGGaCGGCGGCGGCGGCGGCu -3' miRNA: 3'- uGACag---GCUcGUCGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 23997 | 0.72 | 0.573498 |
Target: 5'- cGCUccGUCCGAcgggccgccgucaccGCGGCgccucGGCGACGGCGGUc -3' miRNA: 3'- -UGA--CAGGCU---------------CGUCG-----UCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 113639 | 0.72 | 0.573498 |
Target: 5'- --cGUCuCGAGCAGCGGCccGGCGuccucggcguccagcGCGGCg -3' miRNA: 3'- ugaCAG-GCUCGUCGUCG--UUGU---------------CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 23904 | 0.73 | 0.559534 |
Target: 5'- --gGgagCCGAguGCAGCAGCGugGGCGaGCg -3' miRNA: 3'- ugaCa--GGCU--CGUCGUCGUugUCGC-CG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 91202 | 0.73 | 0.559534 |
Target: 5'- cGCUGUUCGcGGaCGGCGacGCGACGGCGGa -3' miRNA: 3'- -UGACAGGC-UC-GUCGU--CGUUGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 94460 | 0.73 | 0.559534 |
Target: 5'- --aGUCgGuGGCGaCGGCAACGGCGGCg -3' miRNA: 3'- ugaCAGgC-UCGUcGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 60598 | 0.73 | 0.549618 |
Target: 5'- uGCUGga-GGcGCAGCAGCAACAGCagaaccggacgGGCg -3' miRNA: 3'- -UGACaggCU-CGUCGUCGUUGUCG-----------CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 46309 | 0.73 | 0.539757 |
Target: 5'- ---uUCCGAGCgcGGCGGCGACGGCGcCg -3' miRNA: 3'- ugacAGGCUCG--UCGUCGUUGUCGCcG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 21893 | 0.73 | 0.53681 |
Target: 5'- -gUGUCCGcggccugcgucgguGGUGGCGGCGgagacgACGGCGGCg -3' miRNA: 3'- ugACAGGC--------------UCGUCGUCGU------UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 130322 | 0.73 | 0.529957 |
Target: 5'- cCUGgCCGAGaCGGCGGaCGAaGGCGGCg -3' miRNA: 3'- uGACaGGCUC-GUCGUC-GUUgUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 101499 | 0.73 | 0.520222 |
Target: 5'- gGCcgGUCCGAGCGguGCGGCAcACGcCGGCg -3' miRNA: 3'- -UGa-CAGGCUCGU--CGUCGU-UGUcGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 117060 | 0.74 | 0.500971 |
Target: 5'- gGCcGUCCguGAGCcucgGGUacGGCGGCAGCGGCg -3' miRNA: 3'- -UGaCAGG--CUCG----UCG--UCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 188773 | 0.74 | 0.500971 |
Target: 5'- aACaGcCCGGuGCAGCGGUAGCGGcCGGCc -3' miRNA: 3'- -UGaCaGGCU-CGUCGUCGUUGUC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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