miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 49399 0.75 0.454314
Target:  5'- cGCcGUCgGccacGGCGGCcGCGGCGGCGGCg -3'
miRNA:   3'- -UGaCAGgC----UCGUCGuCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 49796 0.69 0.739656
Target:  5'- cACgagCCGAGcCAGgAGCAGCucccGCGGCc -3'
miRNA:   3'- -UGacaGGCUC-GUCgUCGUUGu---CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 50023 0.69 0.776483
Target:  5'- uCUGcUUGAGCAGCGcguccucGCGcuuGCGGCGGCu -3'
miRNA:   3'- uGACaGGCUCGUCGU-------CGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 50127 0.67 0.846264
Target:  5'- aGCUGUCCGA-UGGU--CGACAGCGGg -3'
miRNA:   3'- -UGACAGGCUcGUCGucGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 50754 0.79 0.262405
Target:  5'- cGCUcGUCCGccccgGGCGGCGGCGACGGCGcGUc -3'
miRNA:   3'- -UGA-CAGGC-----UCGUCGUCGUUGUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 51054 0.8 0.22199
Target:  5'- --cGUCCGAGaCGGCGGCGACGGCGa- -3'
miRNA:   3'- ugaCAGGCUC-GUCGUCGUUGUCGCcg -5'
10699 3' -56.8 NC_002794.1 + 54976 0.7 0.720195
Target:  5'- cUUG-CaCGAcccGCcGCGGCGACGGCGGCg -3'
miRNA:   3'- uGACaG-GCU---CGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55170 0.66 0.88338
Target:  5'- aGCg--CCGAGCG--GGCGACucgaGGCGGCg -3'
miRNA:   3'- -UGacaGGCUCGUcgUCGUUG----UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55270 0.74 0.491463
Target:  5'- --aG-CCGGGgGGCGGCggUGGCGGCg -3'
miRNA:   3'- ugaCaGGCUCgUCGUCGuuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55297 0.7 0.720195
Target:  5'- ------aGGGCGGCGGCGGCGucGCGGCg -3'
miRNA:   3'- ugacaggCUCGUCGUCGUUGU--CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55358 0.67 0.838246
Target:  5'- gGCgg-CCGAgGCGGCcgaGGCGGCcgaGGCGGCc -3'
miRNA:   3'- -UGacaGGCU-CGUCG---UCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 56024 0.66 0.896735
Target:  5'- gACUGgaacUCGAcGCAGCGGCAGaagAGCgugGGCa -3'
miRNA:   3'- -UGACa---GGCU-CGUCGUCGUUg--UCG---CCG- -5'
10699 3' -56.8 NC_002794.1 + 56141 0.74 0.48204
Target:  5'- aGCgUGUCguacggCGuGCcGCAGCGGCAGCGGCc -3'
miRNA:   3'- -UG-ACAG------GCuCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 56270 0.7 0.690472
Target:  5'- ----aCCGGGCcgAGCAGCA--GGCGGCa -3'
miRNA:   3'- ugacaGGCUCG--UCGUCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 58051 0.69 0.749253
Target:  5'- --cGUCCccGuCGGCGGCcccGGCGGCGGCg -3'
miRNA:   3'- ugaCAGGcuC-GUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 60598 0.73 0.549618
Target:  5'- uGCUGga-GGcGCAGCAGCAACAGCagaaccggacgGGCg -3'
miRNA:   3'- -UGACaggCU-CGUCGUCGUUGUCG-----------CCG- -5'
10699 3' -56.8 NC_002794.1 + 60837 0.66 0.909187
Target:  5'- --cGUUCGAGCAGaagcucaccgcCGGCGACcuCGGCc -3'
miRNA:   3'- ugaCAGGCUCGUC-----------GUCGUUGucGCCG- -5'
10699 3' -56.8 NC_002794.1 + 61145 0.66 0.88338
Target:  5'- uGCUGccgcccgaccCCGAGCGcGCGGUccggauCGGCGGCu -3'
miRNA:   3'- -UGACa---------GGCUCGU-CGUCGuu----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 62050 0.71 0.640094
Target:  5'- cCUGUcgguggCCGAcGcCGGCGGCGACgccGGCGGCg -3'
miRNA:   3'- uGACA------GGCU-C-GUCGUCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 63436 0.68 0.829214
Target:  5'- --cGcCCGAcaccaccacggccGCGGCGGCGACgaugacgacgaGGCGGCg -3'
miRNA:   3'- ugaCaGGCU-------------CGUCGUCGUUG-----------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.