miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 65132 0.68 0.813119
Target:  5'- cCUGUCCGAGCuccuCGGCGACuG-GGUc -3'
miRNA:   3'- uGACAGGCUCGuc--GUCGUUGuCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 65232 0.7 0.690472
Target:  5'- -----aCGGGCGGCGGUcgccGCGGCGGCg -3'
miRNA:   3'- ugacagGCUCGUCGUCGu---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 65923 0.69 0.786545
Target:  5'- --cGUCgCcGGCGGCGGUGGCgucGGCGGCg -3'
miRNA:   3'- ugaCAG-GcUCGUCGUCGUUG---UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 65956 0.68 0.813119
Target:  5'- --cGUCgCGAGCGGCGGCGucuccucCGGCa -3'
miRNA:   3'- ugaCAG-GCUCGUCGUCGUuguc---GCCG- -5'
10699 3' -56.8 NC_002794.1 + 66040 0.69 0.777405
Target:  5'- --cGUCguCGGGC--CGGCAGCGGCGGCc -3'
miRNA:   3'- ugaCAG--GCUCGucGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 66734 0.68 0.830044
Target:  5'- ----aCCGc-CGGCGGUGGCGGCGGCg -3'
miRNA:   3'- ugacaGGCucGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 66835 0.66 0.903075
Target:  5'- cGCgacUCCGGGCGccgccgucggcGCGGCGagGCcGCGGCg -3'
miRNA:   3'- -UGac-AGGCUCGU-----------CGUCGU--UGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 67015 0.71 0.629968
Target:  5'- --aGUCCG-GCGGCGGCGGC--CGGCu -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGUUGucGCCG- -5'
10699 3' -56.8 NC_002794.1 + 67205 0.7 0.700439
Target:  5'- --cGUCCGGGCGGUgcgcucGGCGcCGgGCGGCu -3'
miRNA:   3'- ugaCAGGCUCGUCG------UCGUuGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 69186 0.66 0.903075
Target:  5'- cGCUGauUCCG-GCAcGCGGCccGCAGCuuGGCc -3'
miRNA:   3'- -UGAC--AGGCuCGU-CGUCGu-UGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 70664 0.66 0.896735
Target:  5'- --cGUgCGcGGCGGCcGCcGCGGCGGUg -3'
miRNA:   3'- ugaCAgGC-UCGUCGuCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 70868 0.84 0.134756
Target:  5'- ---cUCCG-GCGGCGGCAGCGGCGGCu -3'
miRNA:   3'- ugacAGGCuCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 71347 0.76 0.401599
Target:  5'- --cGUCCGccaGGCGgcGCAGCAGguGCGGCa -3'
miRNA:   3'- ugaCAGGC---UCGU--CGUCGUUguCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 75367 0.7 0.720195
Target:  5'- ----aCCGAcccgccGCGGcCGGCGGCGGCGGCc -3'
miRNA:   3'- ugacaGGCU------CGUC-GUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 76784 0.71 0.629968
Target:  5'- --aGUCCGAGCcgGGCgGGCG--AGCGGCg -3'
miRNA:   3'- ugaCAGGCUCG--UCG-UCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 79412 0.79 0.268644
Target:  5'- cCUGUUCGAcaagaccaaggGCccGGCGGCGGCGGCGGCg -3'
miRNA:   3'- uGACAGGCU-----------CG--UCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 82043 0.79 0.25028
Target:  5'- -----gUGGGCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- ugacagGCUCGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 83033 0.67 0.854092
Target:  5'- gGCg--CCGGGCGGCAcCcACGGCGGa -3'
miRNA:   3'- -UGacaGGCUCGUCGUcGuUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 86979 0.71 0.66032
Target:  5'- aGCUGcgaCGAGgucCGGCGGCuuuCGGCGGCg -3'
miRNA:   3'- -UGACag-GCUC---GUCGUCGuu-GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 87052 0.66 0.890168
Target:  5'- gGCUcGgggCCGGGUccuGUAGCGACAGCacGGUg -3'
miRNA:   3'- -UGA-Ca--GGCUCGu--CGUCGUUGUCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.