miRNA display CGI


Results 81 - 100 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 87311 0.66 0.915069
Target:  5'- ----cCCG-GUAGCGGUccccagguccAGCGGCGGCa -3'
miRNA:   3'- ugacaGGCuCGUCGUCG----------UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 87354 0.75 0.454314
Target:  5'- aGCggGUCCG-GCGGCgAGCGGCguucugGGCGGCg -3'
miRNA:   3'- -UGa-CAGGCuCGUCG-UCGUUG------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 88169 0.69 0.777405
Target:  5'- cACaGUCCGGGCAGaAGCAGaaaagGGgGGCu -3'
miRNA:   3'- -UGaCAGGCUCGUCgUCGUUg----UCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 90687 0.66 0.915069
Target:  5'- gGCUGUUCGugugcccGCGGCAggacgaaugguGCGACGugcucGCGGCc -3'
miRNA:   3'- -UGACAGGCu------CGUCGU-----------CGUUGU-----CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 91202 0.73 0.559534
Target:  5'- cGCUGUUCGcGGaCGGCGacGCGACGGCGGa -3'
miRNA:   3'- -UGACAGGC-UC-GUCGU--CGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 91577 0.68 0.813119
Target:  5'- cGCUGaugaacuacUCCGAGUGGCcGCugguGCGcGCGGCc -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGuCGu---UGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 91644 0.72 0.609727
Target:  5'- cCUGUCCGAGCugaAGCuGCAcCuGuCGGCg -3'
miRNA:   3'- uGACAGGCUCG---UCGuCGUuGuC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 91869 0.75 0.454314
Target:  5'- --gGUCCcGGgGGUGGCGGCGGCGGCc -3'
miRNA:   3'- ugaCAGGcUCgUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92311 0.72 0.588547
Target:  5'- gGCUGggCgCGGGCGGCGGgGGCccgggcgGGCGGCu -3'
miRNA:   3'- -UGACa-G-GCUCGUCGUCgUUG-------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92523 0.71 0.65729
Target:  5'- -gUGUCCGAGguGCGcaugaaguccaaccGCGACgaGGUGGCc -3'
miRNA:   3'- ugACAGGCUCguCGU--------------CGUUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92726 0.66 0.888155
Target:  5'- cCUGUCgCGcuGGCuGCuGCAGCAcuuccaguccaucuGCGGCg -3'
miRNA:   3'- uGACAG-GC--UCGuCGuCGUUGU--------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 93827 0.68 0.804411
Target:  5'- aGCUGgcggccaucgCCGAGaucauGGaCGGCcGCGGCGGCg -3'
miRNA:   3'- -UGACa---------GGCUCg----UC-GUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94036 0.71 0.66032
Target:  5'- gGCggGcCCGAgaGCGGCGGCGguGCGGgGGCg -3'
miRNA:   3'- -UGa-CaGGCU--CGUCGUCGU--UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 94141 0.72 0.609727
Target:  5'- --gGUCCGAccGCGGCGGCGcuggACGGUGGg -3'
miRNA:   3'- ugaCAGGCU--CGUCGUCGU----UGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 94460 0.73 0.559534
Target:  5'- --aGUCgGuGGCGaCGGCAACGGCGGCg -3'
miRNA:   3'- ugaCAGgC-UCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94791 0.66 0.88338
Target:  5'- --aGUUCGAGCGGCacggggauGGCAGCgcuacuaccGGCGGg -3'
miRNA:   3'- ugaCAGGCUCGUCG--------UCGUUG---------UCGCCg -5'
10699 3' -56.8 NC_002794.1 + 95006 0.69 0.75875
Target:  5'- uGCUGUCgcugaugGGGCGGCuguGCGGCaucucgccgguGGCGGCg -3'
miRNA:   3'- -UGACAGg------CUCGUCGu--CGUUG-----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95751 0.78 0.28148
Target:  5'- gGCUGguacucgCgGGGCGGCGGCcgcGACGGCGGCc -3'
miRNA:   3'- -UGACa------GgCUCGUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95825 0.76 0.393197
Target:  5'- gGCgGcCgGGGgAGCGGCGGCGGCGGCc -3'
miRNA:   3'- -UGaCaGgCUCgUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 99140 0.66 0.88338
Target:  5'- --cGUaCCuGGC-GCAGCAGaccCAGCGGCa -3'
miRNA:   3'- ugaCA-GGcUCGuCGUCGUU---GUCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.