miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 100096 0.7 0.700439
Target:  5'- --cGUCCGcguGCGGC-GCGuGCAGCGGUg -3'
miRNA:   3'- ugaCAGGCu--CGUCGuCGU-UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100447 0.82 0.165065
Target:  5'- -gUGUCUGAGCGGCGGCGGCgccuucccGGUGGCg -3'
miRNA:   3'- ugACAGGCUCGUCGUCGUUG--------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100538 0.7 0.720195
Target:  5'- ----aCCGAGgAGCAGCG--GGCGGCc -3'
miRNA:   3'- ugacaGGCUCgUCGUCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100818 0.69 0.768136
Target:  5'- --cGUgCCGGGCGGCGGgggcCGGCAGCcgGGCu -3'
miRNA:   3'- ugaCA-GGCUCGUCGUC----GUUGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 101499 0.73 0.520222
Target:  5'- gGCcgGUCCGAGCGguGCGGCAcACGcCGGCg -3'
miRNA:   3'- -UGa-CAGGCUCGU--CGUCGU-UGUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 101787 0.77 0.315687
Target:  5'- cCUGUCCGAGU-GCuGCGccgcugguuggcGCAGCGGCg -3'
miRNA:   3'- uGACAGGCUCGuCGuCGU------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 103566 0.77 0.340688
Target:  5'- --cGUCCGAcgccguggccgacgaGCAGCggucgggcaGGCAGCGGCGGCa -3'
miRNA:   3'- ugaCAGGCU---------------CGUCG---------UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 103793 0.74 0.491463
Target:  5'- gGCUGagcUUGAGguGCGccuGCGACGGCGGCg -3'
miRNA:   3'- -UGACa--GGCUCguCGU---CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 103894 0.66 0.899298
Target:  5'- aGCga--CGAGCAGCGgggcgagaacgccgcGCAAC-GCGGCg -3'
miRNA:   3'- -UGacagGCUCGUCGU---------------CGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 104462 0.69 0.774637
Target:  5'- --aGcCCGGGCGGCgugugcaggaugcgGGCGgccACGGCGGCc -3'
miRNA:   3'- ugaCaGGCUCGUCG--------------UCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 105269 0.67 0.854092
Target:  5'- gGCUGUagUCGAGCAGCcAGCGuugcuCGGgguccCGGCu -3'
miRNA:   3'- -UGACA--GGCUCGUCG-UCGUu----GUC-----GCCG- -5'
10699 3' -56.8 NC_002794.1 + 105521 0.68 0.813119
Target:  5'- cGCcGUCCGaAGCGGacgugagaucCGGCGGCGGCucgGGCg -3'
miRNA:   3'- -UGaCAGGC-UCGUC----------GUCGUUGUCG---CCG- -5'
10699 3' -56.8 NC_002794.1 + 107216 0.77 0.322894
Target:  5'- gGCgccgCCGGGCGGCGcGCGACGGgGGCg -3'
miRNA:   3'- -UGaca-GGCUCGUCGU-CGUUGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 107529 0.67 0.869153
Target:  5'- gACgg-CCG-GC-GCGGCGcCGGCGGCg -3'
miRNA:   3'- -UGacaGGCuCGuCGUCGUuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 107870 0.67 0.869153
Target:  5'- cACUGcaUCgCGgaGGCGGCgcGGCGGguGCGGCu -3'
miRNA:   3'- -UGAC--AG-GC--UCGUCG--UCGUUguCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 108436 0.71 0.629968
Target:  5'- cGCga-CCG-GCGGCAcucGCGGCGGCGGCc -3'
miRNA:   3'- -UGacaGGCuCGUCGU---CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 109166 0.77 0.337674
Target:  5'- -aUGgcgaCGAGCGGCGGUAGCGGCGGa -3'
miRNA:   3'- ugACag--GCUCGUCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 110249 0.71 0.640094
Target:  5'- gGCggagGUuucCCGcGCGGCGucGCGACGGCGGCc -3'
miRNA:   3'- -UGa---CA---GGCuCGUCGU--CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 110623 0.67 0.869153
Target:  5'- ------gGAGCcGCGGCGccGCGGCGGCg -3'
miRNA:   3'- ugacaggCUCGuCGUCGU--UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 112309 0.66 0.909187
Target:  5'- --gGUCCGAcuuCGGCGcCGACGGCGGg -3'
miRNA:   3'- ugaCAGGCUc--GUCGUcGUUGUCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.