Results 121 - 140 of 228 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112336 | 0.72 | 0.619843 |
Target: 5'- aGCgcgCCGGcCGGCGGCGcCGGCGGCg -3' miRNA: 3'- -UGacaGGCUcGUCGUCGUuGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112535 | 0.67 | 0.861724 |
Target: 5'- --gGUCCaagaAGUAGCGGUAGCGG-GGCu -3' miRNA: 3'- ugaCAGGc---UCGUCGUCGUUGUCgCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112639 | 0.71 | 0.650214 |
Target: 5'- gGCUucUCGAGCAGCAgGCAgaggcucucGCAgGCGGCg -3' miRNA: 3'- -UGAcaGGCUCGUCGU-CGU---------UGU-CGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112853 | 0.69 | 0.777405 |
Target: 5'- gGCgcgCCGcAGCAGCuGCuGCAGCGcGCc -3' miRNA: 3'- -UGacaGGC-UCGUCGuCGuUGUCGC-CG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 113133 | 0.67 | 0.872066 |
Target: 5'- -gUGUCCGAgaggaagggcgggcGCGuCAGCGuguagcgcgcgcggGCGGCGGCg -3' miRNA: 3'- ugACAGGCU--------------CGUcGUCGU--------------UGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 113639 | 0.72 | 0.573498 |
Target: 5'- --cGUCuCGAGCAGCGGCccGGCGuccucggcguccagcGCGGCg -3' miRNA: 3'- ugaCAG-GCUCGUCGUCG--UUGU---------------CGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 114179 | 0.7 | 0.680457 |
Target: 5'- aGCUGguuggCCaGGcGCAGCGGCGccACGGcCGGCg -3' miRNA: 3'- -UGACa----GG-CU-CGUCGUCGU--UGUC-GCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 114521 | 0.67 | 0.846264 |
Target: 5'- aGCgagUCGAGCGGCAGCcGC-GCGaGCu -3' miRNA: 3'- -UGacaGGCUCGUCGUCGuUGuCGC-CG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 114705 | 0.72 | 0.579508 |
Target: 5'- cCUGcgagaCGGaCGGCGGCGGCGGCGGCu -3' miRNA: 3'- uGACag---GCUcGUCGUCGUUGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 115045 | 0.7 | 0.71035 |
Target: 5'- uGCga-CCGGGCGGCgGGCGGCAGCGcCg -3' miRNA: 3'- -UGacaGGCUCGUCG-UCGUUGUCGCcG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 115565 | 0.7 | 0.690472 |
Target: 5'- --aG-CCGAGCAGCucGGCGAacgggacgUAGCGGCu -3' miRNA: 3'- ugaCaGGCUCGUCG--UCGUU--------GUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 116125 | 0.86 | 0.091335 |
Target: 5'- --aGUCCGccGCGGCGGCGGCGGCGGCg -3' miRNA: 3'- ugaCAGGCu-CGUCGUCGUUGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 116944 | 0.7 | 0.680457 |
Target: 5'- --cGUCCccGGCGGCGGCGuCGGCGGg -3' miRNA: 3'- ugaCAGGc-UCGUCGUCGUuGUCGCCg -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 117060 | 0.74 | 0.500971 |
Target: 5'- gGCcGUCCguGAGCcucgGGUacGGCGGCAGCGGCg -3' miRNA: 3'- -UGaCAGG--CUCG----UCG--UCGUUGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 117795 | 0.66 | 0.890168 |
Target: 5'- --gGUCCGccgcacguucAGCAGCAGCGACuGCu-- -3' miRNA: 3'- ugaCAGGC----------UCGUCGUCGUUGuCGccg -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 117833 | 0.71 | 0.66032 |
Target: 5'- --gGUCgcaGAGCAGCGGCAcggagcgcgACGGgGGCu -3' miRNA: 3'- ugaCAGg--CUCGUCGUCGU---------UGUCgCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 118255 | 0.67 | 0.861724 |
Target: 5'- gGCUGgaggucggCCgGGGCGGCGGCGcCGGCGuCg -3' miRNA: 3'- -UGACa-------GG-CUCGUCGUCGUuGUCGCcG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 118903 | 0.66 | 0.890168 |
Target: 5'- cGCguagGUCCGuGGCGGUGGgguuCAGCAgGCGGUa -3' miRNA: 3'- -UGa---CAGGC-UCGUCGUC----GUUGU-CGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 119433 | 0.82 | 0.160965 |
Target: 5'- cGCagGUCCGA-CGGCGGCGGCGGUGGCg -3' miRNA: 3'- -UGa-CAGGCUcGUCGUCGUUGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 119697 | 0.77 | 0.315687 |
Target: 5'- gGCUG-CUGGGcCGGCGGCcacAACGGCGGCu -3' miRNA: 3'- -UGACaGGCUC-GUCGUCG---UUGUCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home