miRNA display CGI


Results 141 - 160 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 120067 0.67 0.869153
Target:  5'- cGCggaggCCGAcGCGGCGGUGGCGGCGa- -3'
miRNA:   3'- -UGaca--GGCU-CGUCGUCGUUGUCGCcg -5'
10699 3' -56.8 NC_002794.1 + 120501 0.67 0.846264
Target:  5'- cGCUGcagCCcguGGGCAGCcuGCAgGCGGUGGCc -3'
miRNA:   3'- -UGACa--GG---CUCGUCGu-CGU-UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 120986 0.68 0.795551
Target:  5'- --aGUUCGuGUAGCGGCGGCGGgccaUGGCc -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGUUGUC----GCCG- -5'
10699 3' -56.8 NC_002794.1 + 121373 0.67 0.876373
Target:  5'- --cGUCCGAGcCGGCcGCcgccggGACcGCGGCc -3'
miRNA:   3'- ugaCAGGCUC-GUCGuCG------UUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122171 0.68 0.830044
Target:  5'- cCUGgCCGAGCacGGCGcgcgcguguGCGAC-GCGGCg -3'
miRNA:   3'- uGACaGGCUCG--UCGU---------CGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122418 0.68 0.804411
Target:  5'- -gUGUUCGAGCAGUaccuGGaCGACcuguacagcgAGCGGCu -3'
miRNA:   3'- ugACAGGCUCGUCG----UC-GUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122824 0.66 0.890168
Target:  5'- cCUGUucuUCGAGCGGgAGCGGCAcGCGa- -3'
miRNA:   3'- uGACA---GGCUCGUCgUCGUUGU-CGCcg -5'
10699 3' -56.8 NC_002794.1 + 123267 0.67 0.861724
Target:  5'- gGCUgGUCCGGGCcGCGGUcgUcGCGGg -3'
miRNA:   3'- -UGA-CAGGCUCGuCGUCGuuGuCGCCg -5'
10699 3' -56.8 NC_002794.1 + 123303 0.71 0.66032
Target:  5'- uGCUGgaggagaucUUCGAGCAGCAGgGGCcgcagcugggGGUGGCg -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGUCgUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 123803 0.66 0.903075
Target:  5'- cGCcGUUCGGgggcGCGGacgAGCAGgAGCGGCg -3'
miRNA:   3'- -UGaCAGGCU----CGUCg--UCGUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 125535 0.74 0.500971
Target:  5'- gGCgaa-CGAGC-GCGGCGGCAGCGGUu -3'
miRNA:   3'- -UGacagGCUCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 126374 0.69 0.776483
Target:  5'- cGCUGcgugggcgCCGGggccugcGCGGCGGCGugcGCGGCGGUc -3'
miRNA:   3'- -UGACa-------GGCU-------CGUCGUCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 126597 0.66 0.915069
Target:  5'- gACUGagcgCCGAGgcCGGCGcCGACGucGCGGCg -3'
miRNA:   3'- -UGACa---GGCUC--GUCGUcGUUGU--CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 127195 0.69 0.785637
Target:  5'- cGCgg-CCGcAGCcGCAGCAGCAGCcucaaccccagcaGGCg -3'
miRNA:   3'- -UGacaGGC-UCGuCGUCGUUGUCG-------------CCG- -5'
10699 3' -56.8 NC_002794.1 + 127343 0.76 0.367889
Target:  5'- cGCUG-CCGAgacgcucGCGGCGGCGGC-GCGGCc -3'
miRNA:   3'- -UGACaGGCU-------CGUCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 128138 0.68 0.813119
Target:  5'- --cGUgCGAGgaagaAGCGacGCGACGGCGGCu -3'
miRNA:   3'- ugaCAgGCUCg----UCGU--CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129042 0.67 0.851765
Target:  5'- aACUGUCUGcGGUcguGGCGcGCGACggugugucgcggcuGGCGGCg -3'
miRNA:   3'- -UGACAGGC-UCG---UCGU-CGUUG--------------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129202 0.7 0.71035
Target:  5'- gACga-CCGAGCGGC--CGACGGCGGUg -3'
miRNA:   3'- -UGacaGGCUCGUCGucGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129931 0.72 0.589553
Target:  5'- --aGgCCGuGGCgacGGCGGCGGCGGCGGCu -3'
miRNA:   3'- ugaCaGGC-UCG---UCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 130322 0.73 0.529957
Target:  5'- cCUGgCCGAGaCGGCGGaCGAaGGCGGCg -3'
miRNA:   3'- uGACaGGCUC-GUCGUC-GUUgUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.