miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 139607 0.69 0.777405
Target:  5'- aACgGUcgaCCGAGauCAGC-GCGACGGUGGCg -3'
miRNA:   3'- -UGaCA---GGCUC--GUCGuCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 138427 0.77 0.35294
Target:  5'- gACUcgUCGAGCcGCGGUGGCGGCGGCg -3'
miRNA:   3'- -UGAcaGGCUCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 138134 0.72 0.619843
Target:  5'- cGCcgGUCuCGGGCGGCGGUuucuugcGCAGcCGGCa -3'
miRNA:   3'- -UGa-CAG-GCUCGUCGUCGu------UGUC-GCCG- -5'
10699 3' -56.8 NC_002794.1 + 137930 0.67 0.876373
Target:  5'- cGCgGUCgaUGAGCuggaGGCAGCGGCGGauGCg -3'
miRNA:   3'- -UGaCAG--GCUCG----UCGUCGUUGUCgcCG- -5'
10699 3' -56.8 NC_002794.1 + 137604 0.69 0.786545
Target:  5'- cGCcG-CCG-GCGGUcGCGGCGGCGGUg -3'
miRNA:   3'- -UGaCaGGCuCGUCGuCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 136629 0.71 0.640094
Target:  5'- --gGUCUG-GCAGCGGCu-CAGgGGCa -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGuuGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 136312 0.66 0.896735
Target:  5'- cACUuUCgGAGCGcccGCAGCucuucuCGGUGGCg -3'
miRNA:   3'- -UGAcAGgCUCGU---CGUCGuu----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 130448 0.69 0.777405
Target:  5'- --cGUCCGuGUugGGCGGCGAggcgcUGGCGGCu -3'
miRNA:   3'- ugaCAGGCuCG--UCGUCGUU-----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 130322 0.73 0.529957
Target:  5'- cCUGgCCGAGaCGGCGGaCGAaGGCGGCg -3'
miRNA:   3'- uGACaGGCUC-GUCGUC-GUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129931 0.72 0.589553
Target:  5'- --aGgCCGuGGCgacGGCGGCGGCGGCGGCu -3'
miRNA:   3'- ugaCaGGC-UCG---UCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129202 0.7 0.71035
Target:  5'- gACga-CCGAGCGGC--CGACGGCGGUg -3'
miRNA:   3'- -UGacaGGCUCGUCGucGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 129042 0.67 0.851765
Target:  5'- aACUGUCUGcGGUcguGGCGcGCGACggugugucgcggcuGGCGGCg -3'
miRNA:   3'- -UGACAGGC-UCG---UCGU-CGUUG--------------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 128138 0.68 0.813119
Target:  5'- --cGUgCGAGgaagaAGCGacGCGACGGCGGCu -3'
miRNA:   3'- ugaCAgGCUCg----UCGU--CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 127343 0.76 0.367889
Target:  5'- cGCUG-CCGAgacgcucGCGGCGGCGGC-GCGGCc -3'
miRNA:   3'- -UGACaGGCU-------CGUCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 127195 0.69 0.785637
Target:  5'- cGCgg-CCGcAGCcGCAGCAGCAGCcucaaccccagcaGGCg -3'
miRNA:   3'- -UGacaGGC-UCGuCGUCGUUGUCG-------------CCG- -5'
10699 3' -56.8 NC_002794.1 + 126597 0.66 0.915069
Target:  5'- gACUGagcgCCGAGgcCGGCGcCGACGucGCGGCg -3'
miRNA:   3'- -UGACa---GGCUC--GUCGUcGUUGU--CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 126374 0.69 0.776483
Target:  5'- cGCUGcgugggcgCCGGggccugcGCGGCGGCGugcGCGGCGGUc -3'
miRNA:   3'- -UGACa-------GGCU-------CGUCGUCGU---UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 125535 0.74 0.500971
Target:  5'- gGCgaa-CGAGC-GCGGCGGCAGCGGUu -3'
miRNA:   3'- -UGacagGCUCGuCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 123803 0.66 0.903075
Target:  5'- cGCcGUUCGGgggcGCGGacgAGCAGgAGCGGCg -3'
miRNA:   3'- -UGaCAGGCU----CGUCg--UCGUUgUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 123303 0.71 0.66032
Target:  5'- uGCUGgaggagaucUUCGAGCAGCAGgGGCcgcagcugggGGUGGCg -3'
miRNA:   3'- -UGAC---------AGGCUCGUCGUCgUUG----------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.