miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 123267 0.67 0.861724
Target:  5'- gGCUgGUCCGGGCcGCGGUcgUcGCGGg -3'
miRNA:   3'- -UGA-CAGGCUCGuCGUCGuuGuCGCCg -5'
10699 3' -56.8 NC_002794.1 + 122824 0.66 0.890168
Target:  5'- cCUGUucuUCGAGCGGgAGCGGCAcGCGa- -3'
miRNA:   3'- uGACA---GGCUCGUCgUCGUUGU-CGCcg -5'
10699 3' -56.8 NC_002794.1 + 122418 0.68 0.804411
Target:  5'- -gUGUUCGAGCAGUaccuGGaCGACcuguacagcgAGCGGCu -3'
miRNA:   3'- ugACAGGCUCGUCG----UC-GUUG----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 122171 0.68 0.830044
Target:  5'- cCUGgCCGAGCacGGCGcgcgcguguGCGAC-GCGGCg -3'
miRNA:   3'- uGACaGGCUCG--UCGU---------CGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 121373 0.67 0.876373
Target:  5'- --cGUCCGAGcCGGCcGCcgccggGACcGCGGCc -3'
miRNA:   3'- ugaCAGGCUC-GUCGuCG------UUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 120986 0.68 0.795551
Target:  5'- --aGUUCGuGUAGCGGCGGCGGgccaUGGCc -3'
miRNA:   3'- ugaCAGGCuCGUCGUCGUUGUC----GCCG- -5'
10699 3' -56.8 NC_002794.1 + 120501 0.67 0.846264
Target:  5'- cGCUGcagCCcguGGGCAGCcuGCAgGCGGUGGCc -3'
miRNA:   3'- -UGACa--GG---CUCGUCGu-CGU-UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 120067 0.67 0.869153
Target:  5'- cGCggaggCCGAcGCGGCGGUGGCGGCGa- -3'
miRNA:   3'- -UGaca--GGCU-CGUCGUCGUUGUCGCcg -5'
10699 3' -56.8 NC_002794.1 + 119697 0.77 0.315687
Target:  5'- gGCUG-CUGGGcCGGCGGCcacAACGGCGGCu -3'
miRNA:   3'- -UGACaGGCUC-GUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 119433 0.82 0.160965
Target:  5'- cGCagGUCCGA-CGGCGGCGGCGGUGGCg -3'
miRNA:   3'- -UGa-CAGGCUcGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 118903 0.66 0.890168
Target:  5'- cGCguagGUCCGuGGCGGUGGgguuCAGCAgGCGGUa -3'
miRNA:   3'- -UGa---CAGGC-UCGUCGUC----GUUGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 118255 0.67 0.861724
Target:  5'- gGCUGgaggucggCCgGGGCGGCGGCGcCGGCGuCg -3'
miRNA:   3'- -UGACa-------GG-CUCGUCGUCGUuGUCGCcG- -5'
10699 3' -56.8 NC_002794.1 + 117833 0.71 0.66032
Target:  5'- --gGUCgcaGAGCAGCGGCAcggagcgcgACGGgGGCu -3'
miRNA:   3'- ugaCAGg--CUCGUCGUCGU---------UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 117795 0.66 0.890168
Target:  5'- --gGUCCGccgcacguucAGCAGCAGCGACuGCu-- -3'
miRNA:   3'- ugaCAGGC----------UCGUCGUCGUUGuCGccg -5'
10699 3' -56.8 NC_002794.1 + 117060 0.74 0.500971
Target:  5'- gGCcGUCCguGAGCcucgGGUacGGCGGCAGCGGCg -3'
miRNA:   3'- -UGaCAGG--CUCG----UCG--UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 116944 0.7 0.680457
Target:  5'- --cGUCCccGGCGGCGGCGuCGGCGGg -3'
miRNA:   3'- ugaCAGGc-UCGUCGUCGUuGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 116125 0.86 0.091335
Target:  5'- --aGUCCGccGCGGCGGCGGCGGCGGCg -3'
miRNA:   3'- ugaCAGGCu-CGUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 115565 0.7 0.690472
Target:  5'- --aG-CCGAGCAGCucGGCGAacgggacgUAGCGGCu -3'
miRNA:   3'- ugaCaGGCUCGUCG--UCGUU--------GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 115045 0.7 0.71035
Target:  5'- uGCga-CCGGGCGGCgGGCGGCAGCGcCg -3'
miRNA:   3'- -UGacaGGCUCGUCG-UCGUUGUCGCcG- -5'
10699 3' -56.8 NC_002794.1 + 114705 0.72 0.579508
Target:  5'- cCUGcgagaCGGaCGGCGGCGGCGGCGGCu -3'
miRNA:   3'- uGACag---GCUcGUCGUCGUUGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.