Results 101 - 120 of 228 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 114521 | 0.67 | 0.846264 |
Target: 5'- aGCgagUCGAGCGGCAGCcGC-GCGaGCu -3' miRNA: 3'- -UGacaGGCUCGUCGUCGuUGuCGC-CG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 114179 | 0.7 | 0.680457 |
Target: 5'- aGCUGguuggCCaGGcGCAGCGGCGccACGGcCGGCg -3' miRNA: 3'- -UGACa----GG-CU-CGUCGUCGU--UGUC-GCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 113639 | 0.72 | 0.573498 |
Target: 5'- --cGUCuCGAGCAGCGGCccGGCGuccucggcguccagcGCGGCg -3' miRNA: 3'- ugaCAG-GCUCGUCGUCG--UUGU---------------CGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 113133 | 0.67 | 0.872066 |
Target: 5'- -gUGUCCGAgaggaagggcgggcGCGuCAGCGuguagcgcgcgcggGCGGCGGCg -3' miRNA: 3'- ugACAGGCU--------------CGUcGUCGU--------------UGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112853 | 0.69 | 0.777405 |
Target: 5'- gGCgcgCCGcAGCAGCuGCuGCAGCGcGCc -3' miRNA: 3'- -UGacaGGC-UCGUCGuCGuUGUCGC-CG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112639 | 0.71 | 0.650214 |
Target: 5'- gGCUucUCGAGCAGCAgGCAgaggcucucGCAgGCGGCg -3' miRNA: 3'- -UGAcaGGCUCGUCGU-CGU---------UGU-CGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112535 | 0.67 | 0.861724 |
Target: 5'- --gGUCCaagaAGUAGCGGUAGCGG-GGCu -3' miRNA: 3'- ugaCAGGc---UCGUCGUCGUUGUCgCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112336 | 0.72 | 0.619843 |
Target: 5'- aGCgcgCCGGcCGGCGGCGcCGGCGGCg -3' miRNA: 3'- -UGacaGGCUcGUCGUCGUuGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 112309 | 0.66 | 0.909187 |
Target: 5'- --gGUCCGAcuuCGGCGcCGACGGCGGg -3' miRNA: 3'- ugaCAGGCUc--GUCGUcGUUGUCGCCg -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 110623 | 0.67 | 0.869153 |
Target: 5'- ------gGAGCcGCGGCGccGCGGCGGCg -3' miRNA: 3'- ugacaggCUCGuCGUCGU--UGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 110249 | 0.71 | 0.640094 |
Target: 5'- gGCggagGUuucCCGcGCGGCGucGCGACGGCGGCc -3' miRNA: 3'- -UGa---CA---GGCuCGUCGU--CGUUGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 109166 | 0.77 | 0.337674 |
Target: 5'- -aUGgcgaCGAGCGGCGGUAGCGGCGGa -3' miRNA: 3'- ugACag--GCUCGUCGUCGUUGUCGCCg -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 108436 | 0.71 | 0.629968 |
Target: 5'- cGCga-CCG-GCGGCAcucGCGGCGGCGGCc -3' miRNA: 3'- -UGacaGGCuCGUCGU---CGUUGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 107870 | 0.67 | 0.869153 |
Target: 5'- cACUGcaUCgCGgaGGCGGCgcGGCGGguGCGGCu -3' miRNA: 3'- -UGAC--AG-GC--UCGUCG--UCGUUguCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 107529 | 0.67 | 0.869153 |
Target: 5'- gACgg-CCG-GC-GCGGCGcCGGCGGCg -3' miRNA: 3'- -UGacaGGCuCGuCGUCGUuGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 107216 | 0.77 | 0.322894 |
Target: 5'- gGCgccgCCGGGCGGCGcGCGACGGgGGCg -3' miRNA: 3'- -UGaca-GGCUCGUCGU-CGUUGUCgCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 105521 | 0.68 | 0.813119 |
Target: 5'- cGCcGUCCGaAGCGGacgugagaucCGGCGGCGGCucgGGCg -3' miRNA: 3'- -UGaCAGGC-UCGUC----------GUCGUUGUCG---CCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 105269 | 0.67 | 0.854092 |
Target: 5'- gGCUGUagUCGAGCAGCcAGCGuugcuCGGgguccCGGCu -3' miRNA: 3'- -UGACA--GGCUCGUCG-UCGUu----GUC-----GCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 104462 | 0.69 | 0.774637 |
Target: 5'- --aGcCCGGGCGGCgugugcaggaugcgGGCGgccACGGCGGCc -3' miRNA: 3'- ugaCaGGCUCGUCG--------------UCGU---UGUCGCCG- -5' |
|||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 103894 | 0.66 | 0.899298 |
Target: 5'- aGCga--CGAGCAGCGgggcgagaacgccgcGCAAC-GCGGCg -3' miRNA: 3'- -UGacagGCUCGUCGU---------------CGUUGuCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home