miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 103793 0.74 0.491463
Target:  5'- gGCUGagcUUGAGguGCGccuGCGACGGCGGCg -3'
miRNA:   3'- -UGACa--GGCUCguCGU---CGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 103566 0.77 0.340688
Target:  5'- --cGUCCGAcgccguggccgacgaGCAGCggucgggcaGGCAGCGGCGGCa -3'
miRNA:   3'- ugaCAGGCU---------------CGUCG---------UCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 101787 0.77 0.315687
Target:  5'- cCUGUCCGAGU-GCuGCGccgcugguuggcGCAGCGGCg -3'
miRNA:   3'- uGACAGGCUCGuCGuCGU------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 101499 0.73 0.520222
Target:  5'- gGCcgGUCCGAGCGguGCGGCAcACGcCGGCg -3'
miRNA:   3'- -UGa-CAGGCUCGU--CGUCGU-UGUcGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100818 0.69 0.768136
Target:  5'- --cGUgCCGGGCGGCGGgggcCGGCAGCcgGGCu -3'
miRNA:   3'- ugaCA-GGCUCGUCGUC----GUUGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 100538 0.7 0.720195
Target:  5'- ----aCCGAGgAGCAGCG--GGCGGCc -3'
miRNA:   3'- ugacaGGCUCgUCGUCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100447 0.82 0.165065
Target:  5'- -gUGUCUGAGCGGCGGCGGCgccuucccGGUGGCg -3'
miRNA:   3'- ugACAGGCUCGUCGUCGUUG--------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 100096 0.7 0.700439
Target:  5'- --cGUCCGcguGCGGC-GCGuGCAGCGGUg -3'
miRNA:   3'- ugaCAGGCu--CGUCGuCGU-UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 99140 0.66 0.88338
Target:  5'- --cGUaCCuGGC-GCAGCAGaccCAGCGGCa -3'
miRNA:   3'- ugaCA-GGcUCGuCGUCGUU---GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95825 0.76 0.393197
Target:  5'- gGCgGcCgGGGgAGCGGCGGCGGCGGCc -3'
miRNA:   3'- -UGaCaGgCUCgUCGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95751 0.78 0.28148
Target:  5'- gGCUGguacucgCgGGGCGGCGGCcgcGACGGCGGCc -3'
miRNA:   3'- -UGACa------GgCUCGUCGUCG---UUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 95006 0.69 0.75875
Target:  5'- uGCUGUCgcugaugGGGCGGCuguGCGGCaucucgccgguGGCGGCg -3'
miRNA:   3'- -UGACAGg------CUCGUCGu--CGUUG-----------UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94791 0.66 0.88338
Target:  5'- --aGUUCGAGCGGCacggggauGGCAGCgcuacuaccGGCGGg -3'
miRNA:   3'- ugaCAGGCUCGUCG--------UCGUUG---------UCGCCg -5'
10699 3' -56.8 NC_002794.1 + 94460 0.73 0.559534
Target:  5'- --aGUCgGuGGCGaCGGCAACGGCGGCg -3'
miRNA:   3'- ugaCAGgC-UCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94141 0.72 0.609727
Target:  5'- --gGUCCGAccGCGGCGGCGcuggACGGUGGg -3'
miRNA:   3'- ugaCAGGCU--CGUCGUCGU----UGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 94036 0.71 0.66032
Target:  5'- gGCggGcCCGAgaGCGGCGGCGguGCGGgGGCg -3'
miRNA:   3'- -UGa-CaGGCU--CGUCGUCGU--UGUCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 93827 0.68 0.804411
Target:  5'- aGCUGgcggccaucgCCGAGaucauGGaCGGCcGCGGCGGCg -3'
miRNA:   3'- -UGACa---------GGCUCg----UC-GUCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92726 0.66 0.888155
Target:  5'- cCUGUCgCGcuGGCuGCuGCAGCAcuuccaguccaucuGCGGCg -3'
miRNA:   3'- uGACAG-GC--UCGuCGuCGUUGU--------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92523 0.71 0.65729
Target:  5'- -gUGUCCGAGguGCGcaugaaguccaaccGCGACgaGGUGGCc -3'
miRNA:   3'- ugACAGGCUCguCGU--------------CGUUG--UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92311 0.72 0.588547
Target:  5'- gGCUGggCgCGGGCGGCGGgGGCccgggcgGGCGGCu -3'
miRNA:   3'- -UGACa-G-GCUCGUCGUCgUUG-------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.