Results 41 - 60 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 90687 | 0.66 | 0.915069 |
Target: 5'- gGCUGUUCGugugcccGCGGCAggacgaaugguGCGACGugcucGCGGCc -3' miRNA: 3'- -UGACAGGCu------CGUCGU-----------CGUUGU-----CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 257 | 0.66 | 0.915069 |
Target: 5'- gACUGccgCCGcGCGcGCGGacgcgagGACGGCGGCc -3' miRNA: 3'- -UGACa--GGCuCGU-CGUCg------UUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 189662 | 0.66 | 0.915069 |
Target: 5'- gGCUGgCCGAGCGGUcGCccCGGcCGGg -3' miRNA: 3'- -UGACaGGCUCGUCGuCGuuGUC-GCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 192852 | 0.66 | 0.915069 |
Target: 5'- ----aCCGAGCc-CAGCAcgaacCAGCGGCa -3' miRNA: 3'- ugacaGGCUCGucGUCGUu----GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 126597 | 0.66 | 0.915069 |
Target: 5'- gACUGagcgCCGAGgcCGGCGcCGACGucGCGGCg -3' miRNA: 3'- -UGACa---GGCUC--GUCGUcGUUGU--CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 123803 | 0.66 | 0.903075 |
Target: 5'- cGCcGUUCGGgggcGCGGacgAGCAGgAGCGGCg -3' miRNA: 3'- -UGaCAGGCU----CGUCg--UCGUUgUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 103894 | 0.66 | 0.899298 |
Target: 5'- aGCga--CGAGCAGCGgggcgagaacgccgcGCAAC-GCGGCg -3' miRNA: 3'- -UGacagGCUCGUCGU---------------CGUUGuCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 118903 | 0.66 | 0.890168 |
Target: 5'- cGCguagGUCCGuGGCGGUGGgguuCAGCAgGCGGUa -3' miRNA: 3'- -UGa---CAGGC-UCGUCGUC----GUUGU-CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 87052 | 0.66 | 0.890168 |
Target: 5'- gGCUcGgggCCGGGUccuGUAGCGACAGCacGGUg -3' miRNA: 3'- -UGA-Ca--GGCUCGu--CGUCGUUGUCG--CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 122824 | 0.66 | 0.890168 |
Target: 5'- cCUGUucuUCGAGCGGgAGCGGCAcGCGa- -3' miRNA: 3'- uGACA---GGCUCGUCgUCGUUGU-CGCcg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 22891 | 0.66 | 0.890168 |
Target: 5'- cCUGgccucCCGuugguGGaCGGCGGCGACcGCGGCc -3' miRNA: 3'- uGACa----GGC-----UC-GUCGUCGUUGuCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 181215 | 0.66 | 0.890168 |
Target: 5'- ---uUCCGAaaGCAGCgacgagauccGGCGACGGCGcGCc -3' miRNA: 3'- ugacAGGCU--CGUCG----------UCGUUGUCGC-CG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 145303 | 0.66 | 0.890168 |
Target: 5'- cGCUGUcguauuaaaCCG-GCGcGCGGCG--GGCGGCg -3' miRNA: 3'- -UGACA---------GGCuCGU-CGUCGUugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 47317 | 0.66 | 0.896735 |
Target: 5'- ---uUCCGAGgguggggugccCGGCucccGCGGCGGCGGCc -3' miRNA: 3'- ugacAGGCUC-----------GUCGu---CGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 140078 | 0.66 | 0.896735 |
Target: 5'- --cGUCgCGAGcCAGCAGgacgucCAugguCGGCGGCg -3' miRNA: 3'- ugaCAG-GCUC-GUCGUC------GUu---GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 56024 | 0.66 | 0.896735 |
Target: 5'- gACUGgaacUCGAcGCAGCGGCAGaagAGCgugGGCa -3' miRNA: 3'- -UGACa---GGCU-CGUCGUCGUUg--UCG---CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 192145 | 0.66 | 0.896735 |
Target: 5'- uGCUG-CCG-GC-GCGGUcGCGGCGGa -3' miRNA: 3'- -UGACaGGCuCGuCGUCGuUGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 21461 | 0.66 | 0.896735 |
Target: 5'- gGCgucgCCGugacGGCAaCGGUGGCAGCGGCu -3' miRNA: 3'- -UGaca-GGC----UCGUcGUCGUUGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 136312 | 0.66 | 0.896735 |
Target: 5'- cACUuUCgGAGCGcccGCAGCucuucuCGGUGGCg -3' miRNA: 3'- -UGAcAGgCUCGU---CGUCGuu----GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 70664 | 0.66 | 0.896735 |
Target: 5'- --cGUgCGcGGCGGCcGCcGCGGCGGUg -3' miRNA: 3'- ugaCAgGC-UCGUCGuCGuUGUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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