miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 153120 0.67 0.876373
Target:  5'- gACU--UCGGGUucGGUGGCGGCAGCGGg -3'
miRNA:   3'- -UGAcaGGCUCG--UCGUCGUUGUCGCCg -5'
10699 3' -56.8 NC_002794.1 + 188361 0.67 0.876373
Target:  5'- --cGUCCGGcCGGCGGCGGCcgAG-GGCg -3'
miRNA:   3'- ugaCAGGCUcGUCGUCGUUG--UCgCCG- -5'
10699 3' -56.8 NC_002794.1 + 113133 0.67 0.872066
Target:  5'- -gUGUCCGAgaggaagggcgggcGCGuCAGCGuguagcgcgcgcggGCGGCGGCg -3'
miRNA:   3'- ugACAGGCU--------------CGUcGUCGU--------------UGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 137930 0.67 0.876373
Target:  5'- cGCgGUCgaUGAGCuggaGGCAGCGGCGGauGCg -3'
miRNA:   3'- -UGaCAG--GCUCG----UCGUCGUUGUCgcCG- -5'
10699 3' -56.8 NC_002794.1 + 121373 0.67 0.876373
Target:  5'- --cGUCCGAGcCGGCcGCcgccggGACcGCGGCc -3'
miRNA:   3'- ugaCAGGCUC-GUCGuCG------UUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 107870 0.67 0.869153
Target:  5'- cACUGcaUCgCGgaGGCGGCgcGGCGGguGCGGCu -3'
miRNA:   3'- -UGAC--AG-GC--UCGUCG--UCGUUguCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 107529 0.67 0.869153
Target:  5'- gACgg-CCG-GC-GCGGCGcCGGCGGCg -3'
miRNA:   3'- -UGacaGGCuCGuCGUCGUuGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 48067 0.66 0.88338
Target:  5'- cGCUGauggCCGGcCAGCGGgAGCAGCcGCc -3'
miRNA:   3'- -UGACa---GGCUcGUCGUCgUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 99140 0.66 0.88338
Target:  5'- --cGUaCCuGGC-GCAGCAGaccCAGCGGCa -3'
miRNA:   3'- ugaCA-GGcUCGuCGUCGUU---GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94791 0.66 0.88338
Target:  5'- --aGUUCGAGCGGCacggggauGGCAGCgcuacuaccGGCGGg -3'
miRNA:   3'- ugaCAGGCUCGUCG--------UCGUUG---------UCGCCg -5'
10699 3' -56.8 NC_002794.1 + 122824 0.66 0.890168
Target:  5'- cCUGUucuUCGAGCGGgAGCGGCAcGCGa- -3'
miRNA:   3'- uGACA---GGCUCGUCgUCGUUGU-CGCcg -5'
10699 3' -56.8 NC_002794.1 + 87052 0.66 0.890168
Target:  5'- gGCUcGgggCCGGGUccuGUAGCGACAGCacGGUg -3'
miRNA:   3'- -UGA-Ca--GGCUCGu--CGUCGUUGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 118903 0.66 0.890168
Target:  5'- cGCguagGUCCGuGGCGGUGGgguuCAGCAgGCGGUa -3'
miRNA:   3'- -UGa---CAGGC-UCGUCGUC----GUUGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 117795 0.66 0.890168
Target:  5'- --gGUCCGccgcacguucAGCAGCAGCGACuGCu-- -3'
miRNA:   3'- ugaCAGGC----------UCGUCGUCGUUGuCGccg -5'
10699 3' -56.8 NC_002794.1 + 36946 0.66 0.890168
Target:  5'- --aGUCCGcgucgcGCGGCGGCAGgCAGuCGcGCa -3'
miRNA:   3'- ugaCAGGCu-----CGUCGUCGUU-GUC-GC-CG- -5'
10699 3' -56.8 NC_002794.1 + 37338 0.66 0.890168
Target:  5'- --gGcCCGGGCGGCAGCA--GGUcgGGCc -3'
miRNA:   3'- ugaCaGGCUCGUCGUCGUugUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 92726 0.66 0.888155
Target:  5'- cCUGUCgCGcuGGCuGCuGCAGCAcuuccaguccaucuGCGGCg -3'
miRNA:   3'- uGACAG-GC--UCGuCGuCGUUGU--------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 179625 0.66 0.887479
Target:  5'- gACUG-CCGGGC-GCuGCGACGGaaaggagaagucaGGCg -3'
miRNA:   3'- -UGACaGGCUCGuCGuCGUUGUCg------------CCG- -5'
10699 3' -56.8 NC_002794.1 + 61145 0.66 0.88338
Target:  5'- uGCUGccgcccgaccCCGAGCGcGCGGUccggauCGGCGGCu -3'
miRNA:   3'- -UGACa---------GGCUCGU-CGUCGuu----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 55170 0.66 0.88338
Target:  5'- aGCg--CCGAGCG--GGCGACucgaGGCGGCg -3'
miRNA:   3'- -UGacaGGCUCGUcgUCGUUG----UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.