Results 101 - 120 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10699 | 3' | -56.8 | NC_002794.1 | + | 118255 | 0.67 | 0.861724 |
Target: 5'- gGCUGgaggucggCCgGGGCGGCGGCGcCGGCGuCg -3' miRNA: 3'- -UGACa-------GG-CUCGUCGUCGUuGUCGCcG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 150444 | 0.67 | 0.869153 |
Target: 5'- --aGUCCGGGCGGguGCGGauccCGGaaGGCu -3' miRNA: 3'- ugaCAGGCUCGUCguCGUU----GUCg-CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 152629 | 0.67 | 0.861724 |
Target: 5'- cGCUcGUCCuGGGCGGC-GUucgAGCGGCg -3' miRNA: 3'- -UGA-CAGG-CUCGUCGuCGuugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 123267 | 0.67 | 0.861724 |
Target: 5'- gGCUgGUCCGGGCcGCGGUcgUcGCGGg -3' miRNA: 3'- -UGA-CAGGCUCGuCGUCGuuGuCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 83033 | 0.67 | 0.854092 |
Target: 5'- gGCg--CCGGGCGGCAcCcACGGCGGa -3' miRNA: 3'- -UGacaGGCUCGUCGUcGuUGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 137930 | 0.67 | 0.876373 |
Target: 5'- cGCgGUCgaUGAGCuggaGGCAGCGGCGGauGCg -3' miRNA: 3'- -UGaCAG--GCUCG----UCGUCGUUGUCgcCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 113133 | 0.67 | 0.872066 |
Target: 5'- -gUGUCCGAgaggaagggcgggcGCGuCAGCGuguagcgcgcgcggGCGGCGGCg -3' miRNA: 3'- ugACAGGCU--------------CGUcGUCGU--------------UGUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 37338 | 0.66 | 0.890168 |
Target: 5'- --gGcCCGGGCGGCAGCA--GGUcgGGCc -3' miRNA: 3'- ugaCaGGCUCGUCGUCGUugUCG--CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 92726 | 0.66 | 0.888155 |
Target: 5'- cCUGUCgCGcuGGCuGCuGCAGCAcuuccaguccaucuGCGGCg -3' miRNA: 3'- uGACAG-GC--UCGuCGuCGUUGU--------------CGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 179625 | 0.66 | 0.887479 |
Target: 5'- gACUG-CCGGGC-GCuGCGACGGaaaggagaagucaGGCg -3' miRNA: 3'- -UGACaGGCUCGuCGuCGUUGUCg------------CCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 61145 | 0.66 | 0.88338 |
Target: 5'- uGCUGccgcccgaccCCGAGCGcGCGGUccggauCGGCGGCu -3' miRNA: 3'- -UGACa---------GGCUCGU-CGUCGuu----GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 55170 | 0.66 | 0.88338 |
Target: 5'- aGCg--CCGAGCG--GGCGACucgaGGCGGCg -3' miRNA: 3'- -UGacaGGCUCGUcgUCGUUG----UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 94791 | 0.66 | 0.88338 |
Target: 5'- --aGUUCGAGCGGCacggggauGGCAGCgcuacuaccGGCGGg -3' miRNA: 3'- ugaCAGGCUCGUCG--------UCGUUG---------UCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 99140 | 0.66 | 0.88338 |
Target: 5'- --cGUaCCuGGC-GCAGCAGaccCAGCGGCa -3' miRNA: 3'- ugaCA-GGcUCGuCGUCGUU---GUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 48067 | 0.66 | 0.88338 |
Target: 5'- cGCUGauggCCGGcCAGCGGgAGCAGCcGCc -3' miRNA: 3'- -UGACa---GGCUcGUCGUCgUUGUCGcCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 44423 | 0.67 | 0.876373 |
Target: 5'- gGCg--CCGAGCGGCucgaCGACAcCGGCg -3' miRNA: 3'- -UGacaGGCUCGUCGuc--GUUGUcGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 141395 | 0.67 | 0.879201 |
Target: 5'- --cGUUCGGGgGGCucGGCGACgacgaugaccucgggGGCGGCg -3' miRNA: 3'- ugaCAGGCUCgUCG--UCGUUG---------------UCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 142312 | 0.66 | 0.88338 |
Target: 5'- -gUGgCgGAgGCGGCGGCGcaGGCGGCg -3' miRNA: 3'- ugACaGgCU-CGUCGUCGUugUCGCCG- -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 153120 | 0.67 | 0.876373 |
Target: 5'- gACU--UCGGGUucGGUGGCGGCAGCGGg -3' miRNA: 3'- -UGAcaGGCUCG--UCGUCGUUGUCGCCg -5' |
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10699 | 3' | -56.8 | NC_002794.1 | + | 188361 | 0.67 | 0.876373 |
Target: 5'- --cGUCCGGcCGGCGGCGGCcgAG-GGCg -3' miRNA: 3'- ugaCAGGCUcGUCGUCGUUG--UCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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