miRNA display CGI


Results 21 - 40 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 3' -56.8 NC_002794.1 + 21461 0.66 0.896735
Target:  5'- gGCgucgCCGugacGGCAaCGGUGGCAGCGGCu -3'
miRNA:   3'- -UGaca-GGC----UCGUcGUCGUUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 136312 0.66 0.896735
Target:  5'- cACUuUCgGAGCGcccGCAGCucuucuCGGUGGCg -3'
miRNA:   3'- -UGAcAGgCUCGU---CGUCGuu----GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 70664 0.66 0.896735
Target:  5'- --cGUgCGcGGCGGCcGCcGCGGCGGUg -3'
miRNA:   3'- ugaCAgGC-UCGUCGuCGuUGUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 37338 0.66 0.890168
Target:  5'- --gGcCCGGGCGGCAGCA--GGUcgGGCc -3'
miRNA:   3'- ugaCaGGCUCGUCGUCGUugUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 36946 0.66 0.890168
Target:  5'- --aGUCCGcgucgcGCGGCGGCAGgCAGuCGcGCa -3'
miRNA:   3'- ugaCAGGCu-----CGUCGUCGUU-GUC-GC-CG- -5'
10699 3' -56.8 NC_002794.1 + 117795 0.66 0.890168
Target:  5'- --gGUCCGccgcacguucAGCAGCAGCGACuGCu-- -3'
miRNA:   3'- ugaCAGGC----------UCGUCGUCGUUGuCGccg -5'
10699 3' -56.8 NC_002794.1 + 118903 0.66 0.890168
Target:  5'- cGCguagGUCCGuGGCGGUGGgguuCAGCAgGCGGUa -3'
miRNA:   3'- -UGa---CAGGC-UCGUCGUC----GUUGU-CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 87052 0.66 0.890168
Target:  5'- gGCUcGgggCCGGGUccuGUAGCGACAGCacGGUg -3'
miRNA:   3'- -UGA-Ca--GGCUCGu--CGUCGUUGUCG--CCG- -5'
10699 3' -56.8 NC_002794.1 + 122824 0.66 0.890168
Target:  5'- cCUGUucuUCGAGCGGgAGCGGCAcGCGa- -3'
miRNA:   3'- uGACA---GGCUCGUCgUCGUUGU-CGCcg -5'
10699 3' -56.8 NC_002794.1 + 22891 0.66 0.890168
Target:  5'- cCUGgccucCCGuugguGGaCGGCGGCGACcGCGGCc -3'
miRNA:   3'- uGACa----GGC-----UC-GUCGUCGUUGuCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 181215 0.66 0.890168
Target:  5'- ---uUCCGAaaGCAGCgacgagauccGGCGACGGCGcGCc -3'
miRNA:   3'- ugacAGGCU--CGUCG----------UCGUUGUCGC-CG- -5'
10699 3' -56.8 NC_002794.1 + 145303 0.66 0.890168
Target:  5'- cGCUGUcguauuaaaCCG-GCGcGCGGCG--GGCGGCg -3'
miRNA:   3'- -UGACA---------GGCuCGU-CGUCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 92726 0.66 0.888155
Target:  5'- cCUGUCgCGcuGGCuGCuGCAGCAcuuccaguccaucuGCGGCg -3'
miRNA:   3'- uGACAG-GC--UCGuCGuCGUUGU--------------CGCCG- -5'
10699 3' -56.8 NC_002794.1 + 179625 0.66 0.887479
Target:  5'- gACUG-CCGGGC-GCuGCGACGGaaaggagaagucaGGCg -3'
miRNA:   3'- -UGACaGGCUCGuCGuCGUUGUCg------------CCG- -5'
10699 3' -56.8 NC_002794.1 + 142312 0.66 0.88338
Target:  5'- -gUGgCgGAgGCGGCGGCGcaGGCGGCg -3'
miRNA:   3'- ugACaGgCU-CGUCGUCGUugUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 48067 0.66 0.88338
Target:  5'- cGCUGauggCCGGcCAGCGGgAGCAGCcGCc -3'
miRNA:   3'- -UGACa---GGCUcGUCGUCgUUGUCGcCG- -5'
10699 3' -56.8 NC_002794.1 + 99140 0.66 0.88338
Target:  5'- --cGUaCCuGGC-GCAGCAGaccCAGCGGCa -3'
miRNA:   3'- ugaCA-GGcUCGuCGUCGUU---GUCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 94791 0.66 0.88338
Target:  5'- --aGUUCGAGCGGCacggggauGGCAGCgcuacuaccGGCGGg -3'
miRNA:   3'- ugaCAGGCUCGUCG--------UCGUUG---------UCGCCg -5'
10699 3' -56.8 NC_002794.1 + 55170 0.66 0.88338
Target:  5'- aGCg--CCGAGCG--GGCGACucgaGGCGGCg -3'
miRNA:   3'- -UGacaGGCUCGUcgUCGUUG----UCGCCG- -5'
10699 3' -56.8 NC_002794.1 + 61145 0.66 0.88338
Target:  5'- uGCUGccgcccgaccCCGAGCGcGCGGUccggauCGGCGGCu -3'
miRNA:   3'- -UGACa---------GGCUCGU-CGUCGuu----GUCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.