miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 5' -62.9 NC_002794.1 + 181768 0.66 0.653436
Target:  5'- ---aCGCCGaUgGCgCCGCGCCGcCGCg -3'
miRNA:   3'- aucaGCGGCaGgCGaGGCGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 72918 0.66 0.653436
Target:  5'- --cUCGCCG-CCGCcgucggagCCgGCGuCCGCGCg -3'
miRNA:   3'- aucAGCGGCaGGCGa-------GG-CGC-GGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 76553 0.66 0.65247
Target:  5'- cGGUCGCgCG-CCggguacucacccgGC-CCGcCGCCGCGCa -3'
miRNA:   3'- aUCAGCG-GCaGG-------------CGaGGC-GCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 179105 0.66 0.643768
Target:  5'- -cGUCcgGUCGUCCGCggUCCGgGCgCGCGg -3'
miRNA:   3'- auCAG--CGGCAGGCG--AGGCgCG-GCGUg -5'
10699 5' -62.9 NC_002794.1 + 148776 0.66 0.643768
Target:  5'- gAGUgCGCCugguacccgGUCCGCaCCGuCGCCgaGCACg -3'
miRNA:   3'- aUCA-GCGG---------CAGGCGaGGC-GCGG--CGUG- -5'
10699 5' -62.9 NC_002794.1 + 14486 0.66 0.643768
Target:  5'- --cUCGCUGUUCGCggcggcggcCCGCGCuCGCGg -3'
miRNA:   3'- aucAGCGGCAGGCGa--------GGCGCG-GCGUg -5'
10699 5' -62.9 NC_002794.1 + 111359 0.66 0.642801
Target:  5'- aAGUCGCUGUCCcacaggaGCcgCCGCaaCUGCACc -3'
miRNA:   3'- aUCAGCGGCAGG-------CGa-GGCGc-GGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 70621 0.66 0.634092
Target:  5'- gGGUCGC--UCCGCcCCG-GUCGCACc -3'
miRNA:   3'- aUCAGCGgcAGGCGaGGCgCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 26621 0.66 0.634092
Target:  5'- -cGUCccccaCCGUCCGCgUCCGCGCaccCGgACg -3'
miRNA:   3'- auCAGc----GGCAGGCG-AGGCGCG---GCgUG- -5'
10699 5' -62.9 NC_002794.1 + 186001 0.66 0.634092
Target:  5'- ---cCGCCGggcuccgCCGCUCCGgGcCCGgGCc -3'
miRNA:   3'- aucaGCGGCa------GGCGAGGCgC-GGCgUG- -5'
10699 5' -62.9 NC_002794.1 + 156200 0.66 0.634092
Target:  5'- gAGUCGCCGgucggagggCCGgcgaCUCCGCcggcggcuCCGCGCu -3'
miRNA:   3'- aUCAGCGGCa--------GGC----GAGGCGc-------GGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 141599 0.66 0.634092
Target:  5'- -cGUCGCCGggCgGCUCgGCGaCCGgcuCGCg -3'
miRNA:   3'- auCAGCGGCa-GgCGAGgCGC-GGC---GUG- -5'
10699 5' -62.9 NC_002794.1 + 184019 0.66 0.634092
Target:  5'- --aUCGCCGgCCGCcacggcaCCGCGCgcagCGCGCg -3'
miRNA:   3'- aucAGCGGCaGGCGa------GGCGCG----GCGUG- -5'
10699 5' -62.9 NC_002794.1 + 187579 0.66 0.634092
Target:  5'- ---cCGCCGUCgGCgcggCCGCcGUCGCGa -3'
miRNA:   3'- aucaGCGGCAGgCGa---GGCG-CGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 193802 0.66 0.634092
Target:  5'- ---aCGCCGgcgcCCGCUCgucugGCGCCGaCGCg -3'
miRNA:   3'- aucaGCGGCa---GGCGAGg----CGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 44764 0.66 0.633124
Target:  5'- -cGUCGCCGUCCcgacGCagcgccuccgugaUCgGCGUCaGCACg -3'
miRNA:   3'- auCAGCGGCAGG----CG-------------AGgCGCGG-CGUG- -5'
10699 5' -62.9 NC_002794.1 + 152105 0.66 0.624415
Target:  5'- ---cCGCCGUCUgggGCUugCUGCGCCGCu- -3'
miRNA:   3'- aucaGCGGCAGG---CGA--GGCGCGGCGug -5'
10699 5' -62.9 NC_002794.1 + 12744 0.66 0.624415
Target:  5'- cGGUCcgcuaccaggaGCUG-CCGCUcuugCCGcCGCCGCGCu -3'
miRNA:   3'- aUCAG-----------CGGCaGGCGA----GGC-GCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 113013 0.66 0.624415
Target:  5'- gAG-CGCagcuugCCGUUCUGCGCgGCGCa -3'
miRNA:   3'- aUCaGCGgca---GGCGAGGCGCGgCGUG- -5'
10699 5' -62.9 NC_002794.1 + 105221 0.66 0.624415
Target:  5'- gGGUCgacaggGCCGUgCGCggcgCCaCGCUGCACu -3'
miRNA:   3'- aUCAG------CGGCAgGCGa---GGcGCGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.