miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
107 3' -58.4 AC_000006.1 + 1595 0.71 0.202895
Target:  5'- cUCCCUGAaggucuguGCUCCAGUGCCCAggUg- -3'
miRNA:   3'- -AGGGGCUc-------UGGGGUCACGGGUuuGac -5'
107 3' -58.4 AC_000006.1 + 3788 0.67 0.375019
Target:  5'- gCCCU--GACCCagcaGGUGUCCGAGCUc -3'
miRNA:   3'- aGGGGcuCUGGGg---UCACGGGUUUGAc -5'
107 3' -58.4 AC_000006.1 + 4593 0.68 0.309107
Target:  5'- gCCCCGGGGCCCgAGggaaaccaucguccCCCAAuCUGg -3'
miRNA:   3'- aGGGGCUCUGGGgUCac------------GGGUUuGAC- -5'
107 3' -58.4 AC_000006.1 + 5140 0.7 0.24394
Target:  5'- aCCCUGAGACCCUGGaaggacaugacgcUGgCCGcGCUGg -3'
miRNA:   3'- aGGGGCUCUGGGGUC-------------ACgGGUuUGAC- -5'
107 3' -58.4 AC_000006.1 + 8065 0.66 0.384012
Target:  5'- gUCCUCGAGgaGCCCCAGggugaGuCCCAcGCa- -3'
miRNA:   3'- -AGGGGCUC--UGGGGUCa----C-GGGUuUGac -5'
107 3' -58.4 AC_000006.1 + 14134 0.66 0.411834
Target:  5'- --gCUGGGACCCU-GUGaCCAAGCUGg -3'
miRNA:   3'- aggGGCUCUGGGGuCACgGGUUUGAC- -5'
107 3' -58.4 AC_000006.1 + 17601 0.72 0.167515
Target:  5'- gUCCCCGcccGCCgCCAG-GCCCAGaACUGg -3'
miRNA:   3'- -AGGGGCuc-UGG-GGUCaCGGGUU-UGAC- -5'
107 3' -58.4 AC_000006.1 + 21434 1.09 0.000252
Target:  5'- uUCCCCGAGACCCCAGUGCCCAAACUGg -3'
miRNA:   3'- -AGGGGCUCUGGGGUCACGGGUUUGAC- -5'
107 3' -58.4 AC_000006.1 + 22423 0.68 0.293141
Target:  5'- -gCCCGnGAcCCCCGGUGUCCuGAACg- -3'
miRNA:   3'- agGGGCuCU-GGGGUCACGGG-UUUGac -5'
107 3' -58.4 AC_000006.1 + 23151 0.68 0.324117
Target:  5'- gUCCCCGAGGCCCU--UGCCa------ -3'
miRNA:   3'- -AGGGGCUCUGGGGucACGGguuugac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.