miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
107 5' -53.9 AC_000006.1 + 3637 0.66 0.662807
Target:  5'- cGGCAGCCgCAGccGCCAugACaGCGACg -3'
miRNA:   3'- -CCGUCGG-GUUcaUGGUcaUGgCGUUG- -5'
107 5' -53.9 AC_000006.1 + 15495 0.66 0.662807
Target:  5'- cGGCGGCCCGugcGU-CUGGcGCggCGCAGCa -3'
miRNA:   3'- -CCGUCGGGUu--CAuGGUCaUG--GCGUUG- -5'
107 5' -53.9 AC_000006.1 + 17361 0.66 0.639688
Target:  5'- gGGCGGCCgCGGGU-CCAG-ACgGCu-- -3'
miRNA:   3'- -CCGUCGG-GUUCAuGGUCaUGgCGuug -5'
107 5' -53.9 AC_000006.1 + 3688 0.66 0.628112
Target:  5'- uGGCGGCUgcGGcUGCCGcgGCUGCGGCg -3'
miRNA:   3'- -CCGUCGGguUC-AUGGUcaUGGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 15947 0.66 0.604981
Target:  5'- gGGCGuGaacaCCAccgccGUGCCGG-GCCGCAACa -3'
miRNA:   3'- -CCGU-Cg---GGUu----CAUGGUCaUGGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 20260 0.67 0.581954
Target:  5'- cGGUgaAGCCCGAGUugUuGUGCUGgAAg -3'
miRNA:   3'- -CCG--UCGGGUUCAugGuCAUGGCgUUg -5'
107 5' -53.9 AC_000006.1 + 17545 0.67 0.581954
Target:  5'- uGGCGGguuucauuacaCCCGug-GCCAGUGgCGCGAUg -3'
miRNA:   3'- -CCGUC-----------GGGUucaUGGUCAUgGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 21577 0.67 0.547781
Target:  5'- -cCAGUCUgauGGUGuuCCAGUGCUGCAACc -3'
miRNA:   3'- ccGUCGGGu--UCAU--GGUCAUGGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 17090 0.68 0.525351
Target:  5'- aGguGCCCAugaacggccgcGUGCC-GUGCCGCGGa -3'
miRNA:   3'- cCguCGGGUu----------CAUGGuCAUGGCGUUg -5'
107 5' -53.9 AC_000006.1 + 29770 0.68 0.514266
Target:  5'- uGCAGCUCAucgACUGGUGCUGCGcGCg -3'
miRNA:   3'- cCGUCGGGUucaUGGUCAUGGCGU-UG- -5'
107 5' -53.9 AC_000006.1 + 10549 0.68 0.492392
Target:  5'- cGGCcGUCCGcGaACCGGguucUGCCGCGACu -3'
miRNA:   3'- -CCGuCGGGUuCaUGGUC----AUGGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 20709 0.68 0.492392
Target:  5'- uGGguGCCCAAaaAgUAGgcCCGCAGCc -3'
miRNA:   3'- -CCguCGGGUUcaUgGUCauGGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 9927 0.68 0.492392
Target:  5'- cGCGGCUCAGGUACUccgaGGUcgUGCAGCc -3'
miRNA:   3'- cCGUCGGGUUCAUGG----UCAugGCGUUG- -5'
107 5' -53.9 AC_000006.1 + 3814 0.7 0.409705
Target:  5'- uGGCGGCUCAGGgcuuCCAGcucgGCCaGCAGg -3'
miRNA:   3'- -CCGUCGGGUUCau--GGUCa---UGG-CGUUg -5'
107 5' -53.9 AC_000006.1 + 16625 0.71 0.371729
Target:  5'- cGGCGGC--GGGUGgCGGUGCgGCGGCg -3'
miRNA:   3'- -CCGUCGggUUCAUgGUCAUGgCGUUG- -5'
107 5' -53.9 AC_000006.1 + 997 0.71 0.366243
Target:  5'- uGGguGCCCGGGcaaggcuguaaauccUGCCAGUaccACCGgGAUa -3'
miRNA:   3'- -CCguCGGGUUC---------------AUGGUCA---UGGCgUUG- -5'
107 5' -53.9 AC_000006.1 + 16579 0.71 0.336223
Target:  5'- uGCGGCUgGcguAGUACCgGGUGCCGCggUa -3'
miRNA:   3'- cCGUCGGgU---UCAUGG-UCAUGGCGuuG- -5'
107 5' -53.9 AC_000006.1 + 24331 0.72 0.287728
Target:  5'- gGGCuGCUaGAGUGCCAcUGCCGCuGCa -3'
miRNA:   3'- -CCGuCGGgUUCAUGGUcAUGGCGuUG- -5'
107 5' -53.9 AC_000006.1 + 21389 1.12 0.000379
Target:  5'- uGGCAGCCCAAGUACCAGUACCGCAACg -3'
miRNA:   3'- -CCGUCGGGUUCAUGGUCAUGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.