miRNA display CGI


Results 81 - 100 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 185924 0.67 0.589264
Target:  5'- uCGCCaccgCCGGCcaccCGCCAgGCUCGCgGCCg -3'
miRNA:   3'- -GCGGa---GGUCGuc--GUGGU-CGGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 86547 0.67 0.589264
Target:  5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3'
miRNA:   3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 86379 0.67 0.589264
Target:  5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3'
miRNA:   3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 86187 0.67 0.589264
Target:  5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3'
miRNA:   3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 186919 0.67 0.589264
Target:  5'- gGCC-CCAGUAguGCGCCGcCaCCGcCGCCa -3'
miRNA:   3'- gCGGaGGUCGU--CGUGGUcG-GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 19516 0.67 0.589264
Target:  5'- gCGCCgCUcGgAGCGCCGGCgCgGCGCg -3'
miRNA:   3'- -GCGGaGGuCgUCGUGGUCG-GgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 115928 0.67 0.589264
Target:  5'- gGCg--CGGCGGCggGCCGGCCCGcCGCg -3'
miRNA:   3'- gCGgagGUCGUCG--UGGUCGGGC-GCGg -5'
10700 3' -63.4 NC_002794.1 + 70501 0.67 0.589264
Target:  5'- gCGaCCgaCAGgAGCcgguCCAGCCCGUGCUc -3'
miRNA:   3'- -GC-GGagGUCgUCGu---GGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 47952 0.67 0.589264
Target:  5'- gCGCgUCC--CGGCGCCGGCugggcgaccgCCGCGCg -3'
miRNA:   3'- -GCGgAGGucGUCGUGGUCG----------GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 131176 0.67 0.589264
Target:  5'- cCGUCUCgAGCcggagacagcacGGCGCCgGGgCgGCGCCg -3'
miRNA:   3'- -GCGGAGgUCG------------UCGUGG-UCgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 32481 0.67 0.595969
Target:  5'- uCGCCgCCAGCAccugaaugcucgacGUcuuGCCGGCucccgCCGUGCCg -3'
miRNA:   3'- -GCGGaGGUCGU--------------CG---UGGUCG-----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 61256 0.67 0.598846
Target:  5'- uCGCgCUCCucucccucgAGCGCCcguacgagcaGGUCCGCGCCg -3'
miRNA:   3'- -GCG-GAGGucg------UCGUGG----------UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 112679 0.67 0.598846
Target:  5'- uCGUCUCCAGCuGCcgcgucaccgcgGCCAGCUucuCGCGg- -3'
miRNA:   3'- -GCGGAGGUCGuCG------------UGGUCGG---GCGCgg -5'
10700 3' -63.4 NC_002794.1 + 145323 0.67 0.598846
Target:  5'- gCGCggCgGGCGGCGCUcgGGCCCGagcggGCCc -3'
miRNA:   3'- -GCGgaGgUCGUCGUGG--UCGGGCg----CGG- -5'
10700 3' -63.4 NC_002794.1 + 83863 0.67 0.598846
Target:  5'- aGCCgucgucCCGGuCGGCGCgaCGGCCCcgggcucgGCGCCc -3'
miRNA:   3'- gCGGa-----GGUC-GUCGUG--GUCGGG--------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 128454 0.67 0.597887
Target:  5'- gCGCCUCCGGagcccaggacgacCGGuCACCGGgUCGCGgaCCg -3'
miRNA:   3'- -GCGGAGGUC-------------GUC-GUGGUCgGGCGC--GG- -5'
10700 3' -63.4 NC_002794.1 + 32095 0.67 0.598846
Target:  5'- gGCgUgCAGCauguaccggAGCAUCAGCCCGCacucGUCg -3'
miRNA:   3'- gCGgAgGUCG---------UCGUGGUCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 184619 0.67 0.597887
Target:  5'- gGCCagCGGCAGCguccacgAUCGGCgUCGCGUCg -3'
miRNA:   3'- gCGGagGUCGUCG-------UGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 70629 0.67 0.595969
Target:  5'- cCGCC-CCGGUcGCACCgccaccagguucuuGGCCuCGUGCg -3'
miRNA:   3'- -GCGGaGGUCGuCGUGG--------------UCGG-GCGCGg -5'
10700 3' -63.4 NC_002794.1 + 91689 0.67 0.597887
Target:  5'- gGUCUUCAGCGGCaacucggugcucuACCAGa-CGCGCa -3'
miRNA:   3'- gCGGAGGUCGUCG-------------UGGUCggGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.