Results 101 - 120 of 490 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10700 | 3' | -63.4 | NC_002794.1 | + | 70501 | 0.67 | 0.589264 |
Target: 5'- gCGaCCgaCAGgAGCcgguCCAGCCCGUGCUc -3' miRNA: 3'- -GC-GGagGUCgUCGu---GGUCGGGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 70629 | 0.67 | 0.595969 |
Target: 5'- cCGCC-CCGGUcGCACCgccaccagguucuuGGCCuCGUGCg -3' miRNA: 3'- -GCGGaGGUCGuCGUGG--------------UCGG-GCGCGg -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 184619 | 0.67 | 0.597887 |
Target: 5'- gGCCagCGGCAGCguccacgAUCGGCgUCGCGUCg -3' miRNA: 3'- gCGGagGUCGUCG-------UGGUCG-GGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 32095 | 0.67 | 0.598846 |
Target: 5'- gGCgUgCAGCauguaccggAGCAUCAGCCCGCacucGUCg -3' miRNA: 3'- gCGgAgGUCG---------UCGUGGUCGGGCG----CGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 128454 | 0.67 | 0.597887 |
Target: 5'- gCGCCUCCGGagcccaggacgacCGGuCACCGGgUCGCGgaCCg -3' miRNA: 3'- -GCGGAGGUC-------------GUC-GUGGUCgGGCGC--GG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 83863 | 0.67 | 0.598846 |
Target: 5'- aGCCgucgucCCGGuCGGCGCgaCGGCCCcgggcucgGCGCCc -3' miRNA: 3'- gCGGa-----GGUC-GUCGUG--GUCGGG--------CGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 145323 | 0.67 | 0.598846 |
Target: 5'- gCGCggCgGGCGGCGCUcgGGCCCGagcggGCCc -3' miRNA: 3'- -GCGgaGgUCGUCGUGG--UCGGGCg----CGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 112679 | 0.67 | 0.598846 |
Target: 5'- uCGUCUCCAGCuGCcgcgucaccgcgGCCAGCUucuCGCGg- -3' miRNA: 3'- -GCGGAGGUCGuCG------------UGGUCGG---GCGCgg -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 61256 | 0.67 | 0.598846 |
Target: 5'- uCGCgCUCCucucccucgAGCGCCcguacgagcaGGUCCGCGCCg -3' miRNA: 3'- -GCG-GAGGucg------UCGUGG----------UCGGGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 91689 | 0.67 | 0.597887 |
Target: 5'- gGUCUUCAGCGGCaacucggugcucuACCAGa-CGCGCa -3' miRNA: 3'- gCGGAGGUCGUCG-------------UGGUCggGCGCGg -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 32481 | 0.67 | 0.595969 |
Target: 5'- uCGCCgCCAGCAccugaaugcucgacGUcuuGCCGGCucccgCCGUGCCg -3' miRNA: 3'- -GCGGaGGUCGU--------------CG---UGGUCG-----GGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 131176 | 0.67 | 0.589264 |
Target: 5'- cCGUCUCgAGCcggagacagcacGGCGCCgGGgCgGCGCCg -3' miRNA: 3'- -GCGGAGgUCG------------UCGUGG-UCgGgCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 115928 | 0.67 | 0.589264 |
Target: 5'- gGCg--CGGCGGCggGCCGGCCCGcCGCg -3' miRNA: 3'- gCGgagGUCGUCG--UGGUCGGGC-GCGg -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 19516 | 0.67 | 0.589264 |
Target: 5'- gCGCCgCUcGgAGCGCCGGCgCgGCGCg -3' miRNA: 3'- -GCGGaGGuCgUCGUGGUCG-GgCGCGg -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 186919 | 0.67 | 0.589264 |
Target: 5'- gGCC-CCAGUAguGCGCCGcCaCCGcCGCCa -3' miRNA: 3'- gCGGaGGUCGU--CGUGGUcG-GGC-GCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 86187 | 0.67 | 0.589264 |
Target: 5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3' miRNA: 3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 86379 | 0.67 | 0.589264 |
Target: 5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3' miRNA: 3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 86547 | 0.67 | 0.589264 |
Target: 5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3' miRNA: 3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 185924 | 0.67 | 0.589264 |
Target: 5'- uCGCCaccgCCGGCcaccCGCCAgGCUCGCgGCCg -3' miRNA: 3'- -GCGGa---GGUCGuc--GUGGU-CGGGCG-CGG- -5' |
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10700 | 3' | -63.4 | NC_002794.1 | + | 116128 | 0.67 | 0.589264 |
Target: 5'- cCGCCgcggcggCGGCGGCGgCGGCCaGgGCCu -3' miRNA: 3'- -GCGGag-----GUCGUCGUgGUCGGgCgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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