miRNA display CGI


Results 121 - 140 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 83863 0.67 0.598846
Target:  5'- aGCCgucgucCCGGuCGGCGCgaCGGCCCcgggcucgGCGCCc -3'
miRNA:   3'- gCGGa-----GGUC-GUCGUG--GUCGGG--------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 145323 0.67 0.598846
Target:  5'- gCGCggCgGGCGGCGCUcgGGCCCGagcggGCCc -3'
miRNA:   3'- -GCGgaGgUCGUCGUGG--UCGGGCg----CGG- -5'
10700 3' -63.4 NC_002794.1 + 112679 0.67 0.598846
Target:  5'- uCGUCUCCAGCuGCcgcgucaccgcgGCCAGCUucuCGCGg- -3'
miRNA:   3'- -GCGGAGGUCGuCG------------UGGUCGG---GCGCgg -5'
10700 3' -63.4 NC_002794.1 + 61256 0.67 0.598846
Target:  5'- uCGCgCUCCucucccucgAGCGCCcguacgagcaGGUCCGCGCCg -3'
miRNA:   3'- -GCG-GAGGucg------UCGUGG----------UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 86547 0.67 0.589264
Target:  5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3'
miRNA:   3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 86379 0.67 0.589264
Target:  5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3'
miRNA:   3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 86187 0.67 0.589264
Target:  5'- gGCCgagCCGGgAcggauGCuCCGGgCCGCGCCc -3'
miRNA:   3'- gCGGa--GGUCgU-----CGuGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 59657 0.67 0.57971
Target:  5'- uCGCCa-CGGC-GCugCAgagccGCCUGCGCCu -3'
miRNA:   3'- -GCGGagGUCGuCGugGU-----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 76463 0.67 0.57971
Target:  5'- cCGCCccUCCAcCGucCGCCGGCCCG-GCCg -3'
miRNA:   3'- -GCGG--AGGUcGUc-GUGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 85042 0.67 0.583528
Target:  5'- uGCCUCgGGCccgcgcucgacgaccGGCcacGCCGcGUCUGCGCCc -3'
miRNA:   3'- gCGGAGgUCG---------------UCG---UGGU-CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 84369 0.67 0.583528
Target:  5'- aCGCCgaCAGCGGCACCgagagcagcgaagaaGGCagcgaCGaCGCCg -3'
miRNA:   3'- -GCGGagGUCGUCGUGG---------------UCGg----GC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 8526 0.67 0.583528
Target:  5'- cCGCC-CCugcacgaagucugggAGCAG-ACC-GUCCGCGCCu -3'
miRNA:   3'- -GCGGaGG---------------UCGUCgUGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 181247 0.67 0.588307
Target:  5'- gCGCCuUCCA-CcGCGCguGCCCGCgaacgaaGCCg -3'
miRNA:   3'- -GCGG-AGGUcGuCGUGguCGGGCG-------CGG- -5'
10700 3' -63.4 NC_002794.1 + 179201 0.67 0.583528
Target:  5'- aCGCCccggCCGGCGGCACgacggacgUGGCCCagaugcaacaggucgGCGUCg -3'
miRNA:   3'- -GCGGa---GGUCGUCGUG--------GUCGGG---------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 6936 0.67 0.589264
Target:  5'- aGCCgCCGcGCGGCACCcucucggucucgGGCUCGCuCCc -3'
miRNA:   3'- gCGGaGGU-CGUCGUGG------------UCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 47952 0.67 0.589264
Target:  5'- gCGCgUCC--CGGCGCCGGCugggcgaccgCCGCGCg -3'
miRNA:   3'- -GCGgAGGucGUCGUGGUCG----------GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 70501 0.67 0.589264
Target:  5'- gCGaCCgaCAGgAGCcgguCCAGCCCGUGCUc -3'
miRNA:   3'- -GC-GGagGUCgUCGu---GGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 115928 0.67 0.589264
Target:  5'- gGCg--CGGCGGCggGCCGGCCCGcCGCg -3'
miRNA:   3'- gCGgagGUCGUCG--UGGUCGGGC-GCGg -5'
10700 3' -63.4 NC_002794.1 + 19516 0.67 0.589264
Target:  5'- gCGCCgCUcGgAGCGCCGGCgCgGCGCg -3'
miRNA:   3'- -GCGGaGGuCgUCGUGGUCG-GgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 186919 0.67 0.589264
Target:  5'- gGCC-CCAGUAguGCGCCGcCaCCGcCGCCa -3'
miRNA:   3'- gCGGaGGUCGU--CGUGGUcG-GGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.