miRNA display CGI


Results 21 - 40 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 43234 0.78 0.129474
Target:  5'- uGCgCUgCAGCGGCACCGGCCgGaaCGCCg -3'
miRNA:   3'- gCG-GAgGUCGUCGUGGUCGGgC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 34040 0.77 0.1427
Target:  5'- cCGCCUgCuGCcGgGCCGGCCCGCGCa -3'
miRNA:   3'- -GCGGAgGuCGuCgUGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 184500 0.77 0.153419
Target:  5'- aCGCC-CgGGCGGCGCgGGcCCCGCGCg -3'
miRNA:   3'- -GCGGaGgUCGUCGUGgUC-GGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 55596 0.77 0.157151
Target:  5'- uGCUUCUugaAGCGGCggaacGCCAGCCCGUGCa -3'
miRNA:   3'- gCGGAGG---UCGUCG-----UGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 53052 0.77 0.153419
Target:  5'- gCGgCUCCAGCGuaGgCAGCgCCGCGCCg -3'
miRNA:   3'- -GCgGAGGUCGUcgUgGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 14181 0.77 0.157151
Target:  5'- gCGCCUCCGagacGuCAGCGucCCGGCCCGCugGCCg -3'
miRNA:   3'- -GCGGAGGU----C-GUCGU--GGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 50784 0.77 0.1427
Target:  5'- gCGUCUCgGGCGGCGCCuccucGCCCgGCGUCg -3'
miRNA:   3'- -GCGGAGgUCGUCGUGGu----CGGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 191644 0.77 0.146194
Target:  5'- uCGCCgUCCAGCAGCccGCCGGgggaCgGCGCCg -3'
miRNA:   3'- -GCGG-AGGUCGUCG--UGGUCg---GgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 184563 0.76 0.181311
Target:  5'- aCGCCUCacgcgccgccgCGGCGGCGgCGGCCaCGCGCg -3'
miRNA:   3'- -GCGGAG-----------GUCGUCGUgGUCGG-GCGCGg -5'
10700 3' -63.4 NC_002794.1 + 105437 0.76 0.172092
Target:  5'- cCGCCgcgCCGGCGGCGCCGucguucuGCCCGUucugggacgacgaGCCg -3'
miRNA:   3'- -GCGGa--GGUCGUCGUGGU-------CGGGCG-------------CGG- -5'
10700 3' -63.4 NC_002794.1 + 34779 0.76 0.172912
Target:  5'- cCGCCcgcgCCAGCcgagucGGCcgaACCGGCCCGgGCCg -3'
miRNA:   3'- -GCGGa---GGUCG------UCG---UGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 191502 0.76 0.160965
Target:  5'- cCGCCaccgagaggugCCAGCgccgGGCGUCGGCCCGCGCCu -3'
miRNA:   3'- -GCGGa----------GGUCG----UCGUGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 71752 0.76 0.177067
Target:  5'- cCGCCgCCGGCucuuccgACCGGUCCGCGCCg -3'
miRNA:   3'- -GCGGaGGUCGucg----UGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 190951 0.76 0.177067
Target:  5'- gGCC-CCAGCAGCACCAGCgCCucgGgGCa -3'
miRNA:   3'- gCGGaGGUCGUCGUGGUCG-GG---CgCGg -5'
10700 3' -63.4 NC_002794.1 + 84161 0.76 0.168844
Target:  5'- gCGCCUCCucucGGCccAGCGCuCGGCCCgGCGCUc -3'
miRNA:   3'- -GCGGAGG----UCG--UCGUG-GUCGGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 126105 0.76 0.168844
Target:  5'- gGCUUCCGGCccugGGCGCCGcgcucGUCUGCGCCg -3'
miRNA:   3'- gCGGAGGUCG----UCGUGGU-----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194022 0.75 0.194585
Target:  5'- cCGCCgCCGcCGGCGCCucGCCCGcCGCCg -3'
miRNA:   3'- -GCGGaGGUcGUCGUGGu-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 108203 0.75 0.190069
Target:  5'- gCGCUgcgCC-GCcGCGCCGGCCuCGCGCCc -3'
miRNA:   3'- -GCGGa--GGuCGuCGUGGUCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 186623 0.75 0.203901
Target:  5'- gGUCUCCGcCAGCcgACaCAGCCCGCGCg -3'
miRNA:   3'- gCGGAGGUcGUCG--UG-GUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 106252 0.75 0.194585
Target:  5'- cCGCCgcgaaCCGGCgAGCGCCGcGCgUCGCGCCg -3'
miRNA:   3'- -GCGGa----GGUCG-UCGUGGU-CG-GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.