miRNA display CGI


Results 61 - 80 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 48249 0.74 0.245098
Target:  5'- gGCCg-CAGCAGgAUCAGCCCGCaGCa -3'
miRNA:   3'- gCGGagGUCGUCgUGGUCGGGCG-CGg -5'
10700 3' -63.4 NC_002794.1 + 78093 0.74 0.228892
Target:  5'- uCGCCUCCgucgcgaaacgcGGCGGCGCCuccagacgccGCCCGaGCCg -3'
miRNA:   3'- -GCGGAGG------------UCGUCGUGGu---------CGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 12216 0.74 0.228892
Target:  5'- uGCCggcggcgUCGGCGGCGCCGG-CgGCGCCg -3'
miRNA:   3'- gCGGa------GGUCGUCGUGGUCgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 23963 0.73 0.280355
Target:  5'- gGCUccgagCCAGCGGCGa-GGCCgGCGCCa -3'
miRNA:   3'- gCGGa----GGUCGUCGUggUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 113530 0.73 0.273601
Target:  5'- cCGCCggcUCGGCGuCGCCGGCCCggagcagGCGCCg -3'
miRNA:   3'- -GCGGa--GGUCGUcGUGGUCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 17911 0.73 0.256423
Target:  5'- gGCgUCCGGCAGCucaccACCGGCCgGCuCCc -3'
miRNA:   3'- gCGgAGGUCGUCG-----UGGUCGGgCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 27464 0.73 0.268772
Target:  5'- uGCCUCuCGGCucgacucgucucgucGCGCCgAGgCCGCGCCa -3'
miRNA:   3'- gCGGAG-GUCGu--------------CGUGG-UCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58437 0.73 0.256423
Target:  5'- aCGCCgaggCCAcGCuGCGCCuGgCCGCGCUg -3'
miRNA:   3'- -GCGGa---GGU-CGuCGUGGuCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 181741 0.73 0.262245
Target:  5'- aCGCg-CgAGCGGCcgGCCAGCCCGCugacGCCg -3'
miRNA:   3'- -GCGgaGgUCGUCG--UGGUCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 184170 0.73 0.268173
Target:  5'- gCGUCUCCAcccgacaccGCGGCGCCcggcgaGGCCCGCucccGCCc -3'
miRNA:   3'- -GCGGAGGU---------CGUCGUGG------UCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 130629 0.73 0.262245
Target:  5'- gGUgUUCGGCGuCGCCGGCCCGCccGCCg -3'
miRNA:   3'- gCGgAGGUCGUcGUGGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 58064 0.73 0.254698
Target:  5'- gGCC-CCGGCGGCGgcgggacgggcggcCCGgcGCCCGCGCUc -3'
miRNA:   3'- gCGGaGGUCGUCGU--------------GGU--CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58128 0.73 0.262245
Target:  5'- aGCC-CCugGGCGGC-CUGGCCCGcCGCCu -3'
miRNA:   3'- gCGGaGG--UCGUCGuGGUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 116901 0.73 0.262245
Target:  5'- cCGUCUCCGGCG--GCCGGUCCgGCGUCg -3'
miRNA:   3'- -GCGGAGGUCGUcgUGGUCGGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 120322 0.73 0.268173
Target:  5'- cCGUCUCgaCAcgGGCACCgacAGCCCGCGCCu -3'
miRNA:   3'- -GCGGAG--GUcgUCGUGG---UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62789 0.73 0.273601
Target:  5'- cCGCCUCCGGgccccuaccucucCGGCAC--GCCgGCGCCg -3'
miRNA:   3'- -GCGGAGGUC-------------GUCGUGguCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 124569 0.73 0.262245
Target:  5'- cCGCCaUCCAGCAGCugCGcucgaucguGCgCGUGCUg -3'
miRNA:   3'- -GCGG-AGGUCGUCGugGU---------CGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 17430 0.73 0.268173
Target:  5'- gGUCUCCGcGCcgccGGCGCUcgGGCCCGCGaCCg -3'
miRNA:   3'- gCGGAGGU-CG----UCGUGG--UCGGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 186503 0.73 0.262245
Target:  5'- gCGCCUCCccgccguggaAGCAGCGcggcaccuucuCCAGgcggccuucCCCGCGCCc -3'
miRNA:   3'- -GCGGAGG----------UCGUCGU-----------GGUC---------GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 112856 0.73 0.27421
Target:  5'- gCGCCg-CAGCAGCugCuGCagCGCGCCc -3'
miRNA:   3'- -GCGGagGUCGUCGugGuCGg-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.