miRNA display CGI


Results 81 - 100 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 23963 0.73 0.280355
Target:  5'- gGCUccgagCCAGCGGCGa-GGCCgGCGCCa -3'
miRNA:   3'- gCGGa----GGUCGUCGUggUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 112856 0.73 0.27421
Target:  5'- gCGCCg-CAGCAGCugCuGCagCGCGCCc -3'
miRNA:   3'- -GCGGagGUCGUCGugGuCGg-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 130629 0.73 0.262245
Target:  5'- gGUgUUCGGCGuCGCCGGCCCGCccGCCg -3'
miRNA:   3'- gCGgAGGUCGUcGUGGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 124569 0.73 0.262245
Target:  5'- cCGCCaUCCAGCAGCugCGcucgaucguGCgCGUGCUg -3'
miRNA:   3'- -GCGG-AGGUCGUCGugGU---------CGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 113530 0.73 0.273601
Target:  5'- cCGCCggcUCGGCGuCGCCGGCCCggagcagGCGCCg -3'
miRNA:   3'- -GCGGa--GGUCGUcGUGGUCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 30925 0.73 0.250708
Target:  5'- uCGCuCUCCAgGCuGCGCCcG-CCGCGCCg -3'
miRNA:   3'- -GCG-GAGGU-CGuCGUGGuCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 181741 0.73 0.262245
Target:  5'- aCGCg-CgAGCGGCcgGCCAGCCCGCugacGCCg -3'
miRNA:   3'- -GCGgaGgUCGUCG--UGGUCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 184170 0.73 0.268173
Target:  5'- gCGUCUCCAcccgacaccGCGGCGCCcggcgaGGCCCGCucccGCCc -3'
miRNA:   3'- -GCGGAGGU---------CGUCGUGG------UCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 64811 0.72 0.319524
Target:  5'- aCGCCgcggaCGGCGGCG--AGCCgGCGCCg -3'
miRNA:   3'- -GCGGag---GUCGUCGUggUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 100306 0.72 0.292971
Target:  5'- cCGCCUCCGccGCuGGCACgcgCGGCCgGCGCa -3'
miRNA:   3'- -GCGGAGGU--CG-UCGUG---GUCGGgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 56563 0.72 0.31272
Target:  5'- cCGCC-CCcGCcGCcgACC-GCCCGCGCCg -3'
miRNA:   3'- -GCGGaGGuCGuCG--UGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 44501 0.72 0.292971
Target:  5'- uGUCUCaCGGCGGCccagACCgGGCCCGUGUCc -3'
miRNA:   3'- gCGGAG-GUCGUCG----UGG-UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 107170 0.72 0.319524
Target:  5'- cCGCCgCUAcGCGGCggaGCCGGCgCCGcCGCCg -3'
miRNA:   3'- -GCGGaGGU-CGUCG---UGGUCG-GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 72436 0.72 0.325742
Target:  5'- aGCCggcggagggaCCGGCGGCGCCccgcgcccGGCCCcgcggcgGCGCCg -3'
miRNA:   3'- gCGGa---------GGUCGUCGUGG--------UCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 104258 0.72 0.31272
Target:  5'- aG-CUCgGGCAGCcgcucgGCCGGCaCCGUGCCg -3'
miRNA:   3'- gCgGAGgUCGUCG------UGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 111636 0.72 0.326438
Target:  5'- cCGCCgCCGGUcgGGCGCCGcGgCCGCgGCCa -3'
miRNA:   3'- -GCGGaGGUCG--UCGUGGU-CgGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 112339 0.72 0.292971
Target:  5'- gCGCCggCCGGCGGCGCCGGCggCgGgGCg -3'
miRNA:   3'- -GCGGa-GGUCGUCGUGGUCG--GgCgCGg -5'
10700 3' -63.4 NC_002794.1 + 56172 0.72 0.326438
Target:  5'- gGCC-CCGGUgcacguagAGCACCGGgCCGCGgCa -3'
miRNA:   3'- gCGGaGGUCG--------UCGUGGUCgGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 183697 0.72 0.319524
Target:  5'- cCGCCgcgCgCGGCGGCACagccacaccguCAGCCCgcacGCGCCc -3'
miRNA:   3'- -GCGGa--G-GUCGUCGUG-----------GUCGGG----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 37741 0.72 0.326438
Target:  5'- gCGCCgCCGGCGGCGgCGcGgCgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUgGU-CgGgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.