miRNA display CGI


Results 101 - 120 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 53999 0.72 0.292971
Target:  5'- gCGUCUCCAGCAGCuccCgCAGCaCgGcCGCCu -3'
miRNA:   3'- -GCGGAGGUCGUCGu--G-GUCG-GgC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 188776 0.72 0.306027
Target:  5'- aGCCcggUgCAGCGGUagcgGCCGGCCC-CGCCg -3'
miRNA:   3'- gCGG---AgGUCGUCG----UGGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 56563 0.72 0.31272
Target:  5'- cCGCC-CCcGCcGCcgACC-GCCCGCGCCg -3'
miRNA:   3'- -GCGGaGGuCGuCG--UGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 183697 0.72 0.319524
Target:  5'- cCGCCgcgCgCGGCGGCACagccacaccguCAGCCCgcacGCGCCc -3'
miRNA:   3'- -GCGGa--G-GUCGUCGUG-----------GUCGGG----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 37741 0.72 0.326438
Target:  5'- gCGCCgCCGGCGGCGgCGcGgCgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUgGU-CgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 64811 0.72 0.319524
Target:  5'- aCGCCgcggaCGGCGGCG--AGCCgGCGCCg -3'
miRNA:   3'- -GCGGag---GUCGUCGUggUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 107170 0.72 0.319524
Target:  5'- cCGCCgCUAcGCGGCggaGCCGGCgCCGcCGCCg -3'
miRNA:   3'- -GCGGaGGU-CGUCG---UGGUCG-GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 104258 0.72 0.31272
Target:  5'- aG-CUCgGGCAGCcgcucgGCCGGCaCCGUGCCg -3'
miRNA:   3'- gCgGAGgUCGUCG------UGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 114872 0.72 0.306027
Target:  5'- gCGCCUCgAGCAGCugCAGCgUcUGCUc -3'
miRNA:   3'- -GCGGAGgUCGUCGugGUCGgGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 20355 0.72 0.306027
Target:  5'- cCGCUUCgAGCuGgACCA-CCUGCGCCg -3'
miRNA:   3'- -GCGGAGgUCGuCgUGGUcGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 35729 0.71 0.370992
Target:  5'- gGCCUCCGGCGGCcgcgcgucucacugGCUguccaacgacgucgcGGCaCCGuCGCCg -3'
miRNA:   3'- gCGGAGGUCGUCG--------------UGG---------------UCG-GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 108400 0.71 0.370229
Target:  5'- aGgCUCCGGCGGCGgC-GCCCaccacgGCGCCc -3'
miRNA:   3'- gCgGAGGUCGUCGUgGuCGGG------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 118685 0.71 0.370229
Target:  5'- cCGCCgCCGGCGGCAgC-GCCCaggaGCGCa -3'
miRNA:   3'- -GCGGaGGUCGUCGUgGuCGGG----CGCGg -5'
10700 3' -63.4 NC_002794.1 + 104416 0.71 0.333462
Target:  5'- gGCCU-CGGCcucGGcCGCCGGCCCGgaCGCCg -3'
miRNA:   3'- gCGGAgGUCG---UC-GUGGUCGGGC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 41506 0.71 0.347841
Target:  5'- aCGgCUUCAGCAGCuCCGGUacuuguCCGgGCCg -3'
miRNA:   3'- -GCgGAGGUCGUCGuGGUCG------GGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 78936 0.71 0.370229
Target:  5'- cCGCCgCCGGCAGguCACCcaGGCCCacaacCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUC--GUGG--UCGGGc----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 54830 0.71 0.347841
Target:  5'- gCGUCaugUUCGGCGGCACCcaacGCCCGUagGCCg -3'
miRNA:   3'- -GCGG---AGGUCGUCGUGGu---CGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 100555 0.71 0.340597
Target:  5'- gGCCUUCcccguggccgAGCGGCACCucuucacgcucgGGCCgugCGCGCCg -3'
miRNA:   3'- gCGGAGG----------UCGUCGUGG------------UCGG---GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 188974 0.71 0.370229
Target:  5'- aCGCCgcCCAGCucGGcCACCAGCCaGCGgCa -3'
miRNA:   3'- -GCGGa-GGUCG--UC-GUGGUCGGgCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 53760 0.71 0.333462
Target:  5'- cCGCCgcugCCGGCGGCgggacGCCcGCgaCGCGCCc -3'
miRNA:   3'- -GCGGa---GGUCGUCG-----UGGuCGg-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.