miRNA display CGI


Results 41 - 60 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 16462 0.75 0.208703
Target:  5'- cCGaCUcgUCCGGCuGC-CCAGCCCGcCGCCg -3'
miRNA:   3'- -GC-GG--AGGUCGuCGuGGUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 53917 0.75 0.208703
Target:  5'- uCGCCgUCGGCGGCGCCgccgaaccgAGCUCGCaGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUGG---------UCGGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 194144 0.75 0.213107
Target:  5'- gGCCg-CAGCAGCGCCcgcgAGCCCugccggcGCGCCu -3'
miRNA:   3'- gCGGagGUCGUCGUGG----UCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 119779 0.75 0.213601
Target:  5'- gGCCUCCAgGCGGCuCCGGUCCGC-Cg -3'
miRNA:   3'- gCGGAGGU-CGUCGuGGUCGGGCGcGg -5'
10700 3' -63.4 NC_002794.1 + 70862 0.75 0.213601
Target:  5'- gGCCUCCuccggcggcGGCAGCGgCGGCUCcucgaGCGCCa -3'
miRNA:   3'- gCGGAGG---------UCGUCGUgGUCGGG-----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 192639 0.75 0.213601
Target:  5'- gGCCgcUCCAGCcGCGCC-GCCgCGCGCUc -3'
miRNA:   3'- gCGG--AGGUCGuCGUGGuCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 46212 0.75 0.213601
Target:  5'- cCGCCguUCCGGcCAGCucguCCAGCUCGCucGCCg -3'
miRNA:   3'- -GCGG--AGGUC-GUCGu---GGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 194290 0.75 0.215588
Target:  5'- gCGCCacgUCCAGUcguccAGCGCCAGCgccugccgcagcggaUCGCGCCa -3'
miRNA:   3'- -GCGG---AGGUCG-----UCGUGGUCG---------------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 82641 0.74 0.218598
Target:  5'- cCGCCggcgCCAGaAGCGCCGcGCUCGaCGCCg -3'
miRNA:   3'- -GCGGa---GGUCgUCGUGGU-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 16595 0.74 0.219103
Target:  5'- cCGUCUCCGGCGuCGCCAcccccguccccacccCCCGCGCCa -3'
miRNA:   3'- -GCGGAGGUCGUcGUGGUc--------------GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 111997 0.74 0.223695
Target:  5'- aCGCC-CUGcGCGGuCACCAGUCgGCGCCg -3'
miRNA:   3'- -GCGGaGGU-CGUC-GUGGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 12216 0.74 0.228892
Target:  5'- uGCCggcggcgUCGGCGGCGCCGG-CgGCGCCg -3'
miRNA:   3'- gCGGa------GGUCGUCGUGGUCgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 78093 0.74 0.228892
Target:  5'- uCGCCUCCgucgcgaaacgcGGCGGCGCCuccagacgccGCCCGaGCCg -3'
miRNA:   3'- -GCGGAGG------------UCGUCGUGGu---------CGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 108151 0.74 0.234191
Target:  5'- uCGCCgCCGGgAGCGCCGGCgCGaagaCGCCg -3'
miRNA:   3'- -GCGGaGGUCgUCGUGGUCGgGC----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 60153 0.74 0.234191
Target:  5'- aGCUacuUCCAGCuGCccaaCAGCCCGCGCg -3'
miRNA:   3'- gCGG---AGGUCGuCGug--GUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 67390 0.74 0.234191
Target:  5'- gCGUCggcgCCAGCgucGGCGCCAGCguCgGCGCCa -3'
miRNA:   3'- -GCGGa---GGUCG---UCGUGGUCG--GgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 108435 0.74 0.239593
Target:  5'- cCGCgaCCGGCGGCACUcgcggcggcGGCCCGCcggcacggGCCg -3'
miRNA:   3'- -GCGgaGGUCGUCGUGG---------UCGGGCG--------CGG- -5'
10700 3' -63.4 NC_002794.1 + 14481 0.74 0.239593
Target:  5'- cCGCgCUCgCuguucGCGGCGgCGGCCCGCGCUc -3'
miRNA:   3'- -GCG-GAG-Gu----CGUCGUgGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 48916 0.74 0.239593
Target:  5'- gGCCgcUCC-GCAGCGCCAGCgCCagGCGCUc -3'
miRNA:   3'- gCGG--AGGuCGUCGUGGUCG-GG--CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 48249 0.74 0.245098
Target:  5'- gGCCg-CAGCAGgAUCAGCCCGCaGCa -3'
miRNA:   3'- gCGGagGUCGUCgUGGUCGGGCG-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.