miRNA display CGI


Results 81 - 100 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 113530 0.73 0.273601
Target:  5'- cCGCCggcUCGGCGuCGCCGGCCCggagcagGCGCCg -3'
miRNA:   3'- -GCGGa--GGUCGUcGUGGUCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62789 0.73 0.273601
Target:  5'- cCGCCUCCGGgccccuaccucucCGGCAC--GCCgGCGCCg -3'
miRNA:   3'- -GCGGAGGUC-------------GUCGUGguCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 112856 0.73 0.27421
Target:  5'- gCGCCg-CAGCAGCugCuGCagCGCGCCc -3'
miRNA:   3'- -GCGGagGUCGUCGugGuCGg-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 118387 0.73 0.27421
Target:  5'- uGCCgCuCGGCGGCGCuCAGCCCGUaGCa -3'
miRNA:   3'- gCGGaG-GUCGUCGUG-GUCGGGCG-CGg -5'
10700 3' -63.4 NC_002794.1 + 147 0.73 0.280355
Target:  5'- cCGCCgCaggGGC-GCACCAgcacGCCCGCGCCc -3'
miRNA:   3'- -GCGGaGg--UCGuCGUGGU----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 23963 0.73 0.280355
Target:  5'- gGCUccgagCCAGCGGCGa-GGCCgGCGCCa -3'
miRNA:   3'- gCGGa----GGUCGUCGUggUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 151643 0.73 0.286608
Target:  5'- uCGCCgCCGGcCGGCACuUGGCUCGcCGCCg -3'
miRNA:   3'- -GCGGaGGUC-GUCGUG-GUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 61811 0.73 0.286608
Target:  5'- cCGCucauCUCCGGCGGcCGCCggcGGCCgGCGUCa -3'
miRNA:   3'- -GCG----GAGGUCGUC-GUGG---UCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 44501 0.72 0.292971
Target:  5'- uGUCUCaCGGCGGCccagACCgGGCCCGUGUCc -3'
miRNA:   3'- gCGGAG-GUCGUCG----UGG-UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 41899 0.72 0.292971
Target:  5'- aGCgCUCCAGCAGCgcGCCacgAGCCCcucguGgGCCa -3'
miRNA:   3'- gCG-GAGGUCGUCG--UGG---UCGGG-----CgCGG- -5'
10700 3' -63.4 NC_002794.1 + 100306 0.72 0.292971
Target:  5'- cCGCCUCCGccGCuGGCACgcgCGGCCgGCGCa -3'
miRNA:   3'- -GCGGAGGU--CG-UCGUG---GUCGGgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 53999 0.72 0.292971
Target:  5'- gCGUCUCCAGCAGCuccCgCAGCaCgGcCGCCu -3'
miRNA:   3'- -GCGGAGGUCGUCGu--G-GUCG-GgC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 112339 0.72 0.292971
Target:  5'- gCGCCggCCGGCGGCGCCGGCggCgGgGCg -3'
miRNA:   3'- -GCGGa-GGUCGUCGUGGUCG--GgCgCGg -5'
10700 3' -63.4 NC_002794.1 + 114741 0.72 0.292971
Target:  5'- uCGUCgagCCGGCGcCGCCcGCCgGCGCCg -3'
miRNA:   3'- -GCGGa--GGUCGUcGUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 116994 0.72 0.298792
Target:  5'- uCGCCgUCC-GCGGCgucucgcccagguACCAG-CCGCGCCa -3'
miRNA:   3'- -GCGG-AGGuCGUCG-------------UGGUCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 20355 0.72 0.306027
Target:  5'- cCGCUUCgAGCuGgACCA-CCUGCGCCg -3'
miRNA:   3'- -GCGGAGgUCGuCgUGGUcGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 114872 0.72 0.306027
Target:  5'- gCGCCUCgAGCAGCugCAGCgUcUGCUc -3'
miRNA:   3'- -GCGGAGgUCGUCGugGUCGgGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 44399 0.72 0.306027
Target:  5'- gCGCCcguUCCGGUcugACCGGCCgGCGCCg -3'
miRNA:   3'- -GCGG---AGGUCGucgUGGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 57488 0.72 0.306027
Target:  5'- gCGCgaCCAGguGCGCgC-GCCCGcCGCCu -3'
miRNA:   3'- -GCGgaGGUCguCGUG-GuCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 188776 0.72 0.306027
Target:  5'- aGCCcggUgCAGCGGUagcgGCCGGCCC-CGCCg -3'
miRNA:   3'- gCGG---AgGUCGUCG----UGGUCGGGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.