miRNA display CGI


Results 101 - 120 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 104258 0.72 0.31272
Target:  5'- aG-CUCgGGCAGCcgcucgGCCGGCaCCGUGCCg -3'
miRNA:   3'- gCgGAGgUCGUCG------UGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 56563 0.72 0.31272
Target:  5'- cCGCC-CCcGCcGCcgACC-GCCCGCGCCg -3'
miRNA:   3'- -GCGGaGGuCGuCG--UGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 64811 0.72 0.319524
Target:  5'- aCGCCgcggaCGGCGGCG--AGCCgGCGCCg -3'
miRNA:   3'- -GCGGag---GUCGUCGUggUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 107170 0.72 0.319524
Target:  5'- cCGCCgCUAcGCGGCggaGCCGGCgCCGcCGCCg -3'
miRNA:   3'- -GCGGaGGU-CGUCG---UGGUCG-GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 183697 0.72 0.319524
Target:  5'- cCGCCgcgCgCGGCGGCACagccacaccguCAGCCCgcacGCGCCc -3'
miRNA:   3'- -GCGGa--G-GUCGUCGUG-----------GUCGGG----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 72436 0.72 0.325742
Target:  5'- aGCCggcggagggaCCGGCGGCGCCccgcgcccGGCCCcgcggcgGCGCCg -3'
miRNA:   3'- gCGGa---------GGUCGUCGUGG--------UCGGG-------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 37741 0.72 0.326438
Target:  5'- gCGCCgCCGGCGGCGgCGcGgCgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUgGU-CgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 111636 0.72 0.326438
Target:  5'- cCGCCgCCGGUcgGGCGCCGcGgCCGCgGCCa -3'
miRNA:   3'- -GCGGaGGUCG--UCGUGGU-CgGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 56172 0.72 0.326438
Target:  5'- gGCC-CCGGUgcacguagAGCACCGGgCCGCGgCa -3'
miRNA:   3'- gCGGaGGUCG--------UCGUGGUCgGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 36644 0.72 0.326438
Target:  5'- uCGgCUCCGGCAGCcgauCCcgaaagAGUuuGCGCCa -3'
miRNA:   3'- -GCgGAGGUCGUCGu---GG------UCGggCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 104416 0.71 0.333462
Target:  5'- gGCCU-CGGCcucGGcCGCCGGCCCGgaCGCCg -3'
miRNA:   3'- gCGGAgGUCG---UC-GUGGUCGGGC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 186275 0.71 0.333462
Target:  5'- cCGCCUggCgCGGCGGCACCgcggccaggcGGCCgGuCGCCg -3'
miRNA:   3'- -GCGGA--G-GUCGUCGUGG----------UCGGgC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 53760 0.71 0.333462
Target:  5'- cCGCCgcugCCGGCGGCgggacGCCcGCgaCGCGCCc -3'
miRNA:   3'- -GCGGa---GGUCGUCG-----UGGuCGg-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 100555 0.71 0.340597
Target:  5'- gGCCUUCcccguggccgAGCGGCACCucuucacgcucgGGCCgugCGCGCCg -3'
miRNA:   3'- gCGGAGG----------UCGUCGUGG------------UCGG---GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 113833 0.71 0.340597
Target:  5'- gGCCUCCAGguGcuuCugCAGCCUgGCGUg -3'
miRNA:   3'- gCGGAGGUCguC---GugGUCGGG-CGCGg -5'
10700 3' -63.4 NC_002794.1 + 93709 0.71 0.340597
Target:  5'- gCGCCUggucgaCCuGCuguuGCGCC-GCUCGCGCCg -3'
miRNA:   3'- -GCGGA------GGuCGu---CGUGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 67012 0.71 0.347841
Target:  5'- aCGagUCCGGCGGCggcgGCCGGCUCcCGCCg -3'
miRNA:   3'- -GCggAGGUCGUCG----UGGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 41506 0.71 0.347841
Target:  5'- aCGgCUUCAGCAGCuCCGGUacuuguCCGgGCCg -3'
miRNA:   3'- -GCgGAGGUCGUCGuGGUCG------GGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 59293 0.71 0.347841
Target:  5'- uCGCCgcucgacgCCGcGCAGCGCCAcggcgcGCCCGacuuCGCCg -3'
miRNA:   3'- -GCGGa-------GGU-CGUCGUGGU------CGGGC----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 115067 0.71 0.347841
Target:  5'- gCGCCgUCCAGUccacggccucGGCgGCC-GCCCGCaGCCg -3'
miRNA:   3'- -GCGG-AGGUCG----------UCG-UGGuCGGGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.