miRNA display CGI


Results 121 - 140 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 41506 0.71 0.347841
Target:  5'- aCGgCUUCAGCAGCuCCGGUacuuguCCGgGCCg -3'
miRNA:   3'- -GCgGAGGUCGUCGuGGUCG------GGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 54830 0.71 0.347841
Target:  5'- gCGUCaugUUCGGCGGCACCcaacGCCCGUagGCCg -3'
miRNA:   3'- -GCGG---AGGUCGUCGUGGu---CGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 143533 0.71 0.354455
Target:  5'- cCGCgUCCAggaggcGCGGCAcgagcacgguggcCCAGCCgugCGCGCCg -3'
miRNA:   3'- -GCGgAGGU------CGUCGU-------------GGUCGG---GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 101461 0.71 0.355195
Target:  5'- cCGCCcgaaacgCCGGC-GCGCCcGCCCGaaaCGCCg -3'
miRNA:   3'- -GCGGa------GGUCGuCGUGGuCGGGC---GCGG- -5'
10700 3' -63.4 NC_002794.1 + 185375 0.71 0.355195
Target:  5'- aCGCCgcgagcgaggCCAGCcagaagacgagGGCGCgGGCCCGacCGCCg -3'
miRNA:   3'- -GCGGa---------GGUCG-----------UCGUGgUCGGGC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 99953 0.71 0.355195
Target:  5'- gGCCggaccgCCGaCGGCGCCAGUCUGUGCg -3'
miRNA:   3'- gCGGa-----GGUcGUCGUGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 1243 0.71 0.355195
Target:  5'- cCGUCUCCgAGCcGCccggagGCCAGUgUGCGCCa -3'
miRNA:   3'- -GCGGAGG-UCGuCG------UGGUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 182196 0.71 0.355195
Target:  5'- gGCCUC----GGCGCCGGCgUCGCGCCa -3'
miRNA:   3'- gCGGAGgucgUCGUGGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 192452 0.71 0.362658
Target:  5'- gCGCCUCgCAGUcgcGCGCCA-CCaGCGCCg -3'
miRNA:   3'- -GCGGAG-GUCGu--CGUGGUcGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 79021 0.71 0.362658
Target:  5'- cCGCCcUCGGCcGCcuucuGCCGGCCCG-GCCg -3'
miRNA:   3'- -GCGGaGGUCGuCG-----UGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 122680 0.71 0.362658
Target:  5'- gGCUgugCCGGUcGCGCCAGCgCCGgGCg -3'
miRNA:   3'- gCGGa--GGUCGuCGUGGUCG-GGCgCGg -5'
10700 3' -63.4 NC_002794.1 + 76530 0.71 0.362658
Target:  5'- gGCCaCCGGCcgcGGCGCCgacgcGGUCgCGCGCCg -3'
miRNA:   3'- gCGGaGGUCG---UCGUGG-----UCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 119936 0.71 0.362658
Target:  5'- gCGCCgaucUCCAGCcGCGCCAGCaggucgagCGUGCUc -3'
miRNA:   3'- -GCGG----AGGUCGuCGUGGUCGg-------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 145206 0.71 0.365673
Target:  5'- gGcCCUCCGGCAGCGCuCcuucguggugucggaGGCgCGCGCg -3'
miRNA:   3'- gC-GGAGGUCGUCGUG-G---------------UCGgGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 34696 0.71 0.370229
Target:  5'- uCGUCacccgCCAGCAG-GCCcGCCgGCGCCa -3'
miRNA:   3'- -GCGGa----GGUCGUCgUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 148198 0.71 0.370229
Target:  5'- gGUCUCC---GGCGCCGGCgCGCGCUc -3'
miRNA:   3'- gCGGAGGucgUCGUGGUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 127198 0.71 0.370229
Target:  5'- gGCCgcagCC-GCAGCAgCAGCCUcaaccccagcagGCGCCc -3'
miRNA:   3'- gCGGa---GGuCGUCGUgGUCGGG------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 188974 0.71 0.370229
Target:  5'- aCGCCgcCCAGCucGGcCACCAGCCaGCGgCa -3'
miRNA:   3'- -GCGGa-GGUCG--UC-GUGGUCGGgCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 78936 0.71 0.370229
Target:  5'- cCGCCgCCGGCAGguCACCcaGGCCCacaacCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUC--GUGG--UCGGGc----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 39555 0.71 0.370229
Target:  5'- gGCCUCU-GCGGCGCCcuguacCCCGUGCUc -3'
miRNA:   3'- gCGGAGGuCGUCGUGGuc----GGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.