miRNA display CGI


Results 61 - 80 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 105653 0.66 0.61807
Target:  5'- cCGUCUCgCcGCGGCGCgCuccGCCCGgacCGCCg -3'
miRNA:   3'- -GCGGAG-GuCGUCGUG-Gu--CGGGC---GCGG- -5'
10700 3' -63.4 NC_002794.1 + 79683 0.66 0.61807
Target:  5'- uGCUUCCucgAGCAGCucggGCCGccGCUCGUGUCc -3'
miRNA:   3'- gCGGAGG---UCGUCG----UGGU--CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 135483 0.66 0.61807
Target:  5'- aCGCCgCCGucgacGC-GCGCgGGCCCGaUGCCc -3'
miRNA:   3'- -GCGGaGGU-----CGuCGUGgUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 182528 0.66 0.61807
Target:  5'- cCGuCCaCCAGC-GCGgCAGCgaCUGCGCCg -3'
miRNA:   3'- -GC-GGaGGUCGuCGUgGUCG--GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 13790 0.66 0.617107
Target:  5'- uGgCUCCGGCcgucuucgcgacgGGC-CCGGCCgGCGgCg -3'
miRNA:   3'- gCgGAGGUCG-------------UCGuGGUCGGgCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 114987 0.66 0.612297
Target:  5'- gGCgUCCuguaguucgcggagcAGCucucGCACCcGCCgCGCGCCc -3'
miRNA:   3'- gCGgAGG---------------UCGu---CGUGGuCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 34096 0.66 0.60845
Target:  5'- aGCCgUCgGGCGGC-CCGGaCCGCGaCg -3'
miRNA:   3'- gCGG-AGgUCGUCGuGGUCgGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 113415 0.66 0.60845
Target:  5'- aGCUggUCCAGCA-CGUCGGCguucugCCGCGCCg -3'
miRNA:   3'- gCGG--AGGUCGUcGUGGUCG------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 36278 0.66 0.60845
Target:  5'- cCGCgUCCcgcgacugcGGguGCACgAGCUCGCcCCg -3'
miRNA:   3'- -GCGgAGG---------UCguCGUGgUCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 62893 0.66 0.60845
Target:  5'- aCGCC-CCAGaaccccUACCAGCuCCGCGUg -3'
miRNA:   3'- -GCGGaGGUCguc---GUGGUCG-GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 59518 0.66 0.60845
Target:  5'- gGCUUCCcGCuGCACCcggcGCUgGCGCa -3'
miRNA:   3'- gCGGAGGuCGuCGUGGu---CGGgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 63929 0.66 0.60845
Target:  5'- cCGCCcggCCGGCgAGUcucgaguccgacGCCucGCCgCGCGCCc -3'
miRNA:   3'- -GCGGa--GGUCG-UCG------------UGGu-CGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58780 0.66 0.60845
Target:  5'- gGCCUacgUCAGCGcGCugCAcGaCCgGCGCCu -3'
miRNA:   3'- gCGGA---GGUCGU-CGugGU-C-GGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 91727 0.66 0.60845
Target:  5'- uCGCCUucuucUCGGCGGCcaacaagguGCCGGCgggcggcaCCGCGCa -3'
miRNA:   3'- -GCGGA-----GGUCGUCG---------UGGUCG--------GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 69732 0.66 0.60845
Target:  5'- uGCCgCCGG-AGCGCCacGGCCgGCgacGCCg -3'
miRNA:   3'- gCGGaGGUCgUCGUGG--UCGGgCG---CGG- -5'
10700 3' -63.4 NC_002794.1 + 40542 0.66 0.607489
Target:  5'- aCGagggggCCGGCGGCAUgAGCUucucguuCGCGCCg -3'
miRNA:   3'- -GCgga---GGUCGUCGUGgUCGG-------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 18550 0.66 0.607489
Target:  5'- aGCa--CGGCGGCgACCGcgaccguGCCCGCGaCCg -3'
miRNA:   3'- gCGgagGUCGUCG-UGGU-------CGGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 75270 0.66 0.607489
Target:  5'- cCGgCUCCA-CcGCccacccgGCCGGCCgGCGCCu -3'
miRNA:   3'- -GCgGAGGUcGuCG-------UGGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 68937 0.66 0.607489
Target:  5'- uCGCCcgcgggCC-GCGGCGCCGGCgccucucccuccuCCGCggGCCg -3'
miRNA:   3'- -GCGGa-----GGuCGUCGUGGUCG-------------GGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 61256 0.67 0.598846
Target:  5'- uCGCgCUCCucucccucgAGCGCCcguacgagcaGGUCCGCGCCg -3'
miRNA:   3'- -GCG-GAGGucg------UCGUGG----------UCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.