miRNA display CGI


Results 101 - 120 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 116128 0.67 0.589264
Target:  5'- cCGCCgcggcggCGGCGGCGgCGGCCaGgGCCu -3'
miRNA:   3'- -GCGGag-----GUCGUCGUgGUCGGgCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 131176 0.67 0.589264
Target:  5'- cCGUCUCgAGCcggagacagcacGGCGCCgGGgCgGCGCCg -3'
miRNA:   3'- -GCGGAGgUCG------------UCGUGG-UCgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 181247 0.67 0.588307
Target:  5'- gCGCCuUCCA-CcGCGCguGCCCGCgaacgaaGCCg -3'
miRNA:   3'- -GCGG-AGGUcGuCGUGguCGGGCG-------CGG- -5'
10700 3' -63.4 NC_002794.1 + 85042 0.67 0.583528
Target:  5'- uGCCUCgGGCccgcgcucgacgaccGGCcacGCCGcGUCUGCGCCc -3'
miRNA:   3'- gCGGAGgUCG---------------UCG---UGGU-CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 84369 0.67 0.583528
Target:  5'- aCGCCgaCAGCGGCACCgagagcagcgaagaaGGCagcgaCGaCGCCg -3'
miRNA:   3'- -GCGGagGUCGUCGUGG---------------UCGg----GC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 8526 0.67 0.583528
Target:  5'- cCGCC-CCugcacgaagucugggAGCAG-ACC-GUCCGCGCCu -3'
miRNA:   3'- -GCGGaGG---------------UCGUCgUGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 179201 0.67 0.583528
Target:  5'- aCGCCccggCCGGCGGCACgacggacgUGGCCCagaugcaacaggucgGCGUCg -3'
miRNA:   3'- -GCGGa---GGUCGUCGUG--------GUCGGG---------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 19588 0.67 0.57971
Target:  5'- uGCCUCCucCGGC-CCGGCgaGCgGCCg -3'
miRNA:   3'- gCGGAGGucGUCGuGGUCGggCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 103013 0.67 0.57971
Target:  5'- aGCCgCUAGCccGCccGCCAGCCC-CGCUc -3'
miRNA:   3'- gCGGaGGUCGu-CG--UGGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 75576 0.67 0.57971
Target:  5'- -uUCUCCGcGCAGUggcuGCCGGCcgCCGCGCa -3'
miRNA:   3'- gcGGAGGU-CGUCG----UGGUCG--GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 39686 0.67 0.57971
Target:  5'- gCGCUUCUucgucGCccGGCACC-GCCgGCGCUa -3'
miRNA:   3'- -GCGGAGGu----CG--UCGUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 55629 0.67 0.57971
Target:  5'- aCGCUggCCAGCAcGCggGCCGGCagGCGCa -3'
miRNA:   3'- -GCGGa-GGUCGU-CG--UGGUCGggCGCGg -5'
10700 3' -63.4 NC_002794.1 + 53105 0.67 0.57971
Target:  5'- gGaCC-CCGGCGGUuCCggAGCUCGCGUCg -3'
miRNA:   3'- gC-GGaGGUCGUCGuGG--UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 98969 0.67 0.57971
Target:  5'- gCGCCgUCGGCGGCGCCguGGCCUcgguggucgGCGgCu -3'
miRNA:   3'- -GCGGaGGUCGUCGUGG--UCGGG---------CGCgG- -5'
10700 3' -63.4 NC_002794.1 + 41251 0.67 0.57971
Target:  5'- cCGCCgacgCCGGCGGC-CCGuCgUCGCGCUc -3'
miRNA:   3'- -GCGGa---GGUCGUCGuGGUcG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194915 0.67 0.57971
Target:  5'- uCGCCgaCAGCAgcggccGCACCAGCuCCGaCGgCg -3'
miRNA:   3'- -GCGGagGUCGU------CGUGGUCG-GGC-GCgG- -5'
10700 3' -63.4 NC_002794.1 + 185288 0.67 0.57971
Target:  5'- cCGCCggaCAGguCAGCACCA-CCCGguCGCCc -3'
miRNA:   3'- -GCGGag-GUC--GUCGUGGUcGGGC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 59657 0.67 0.57971
Target:  5'- uCGCCa-CGGC-GCugCAgagccGCCUGCGCCu -3'
miRNA:   3'- -GCGGagGUCGuCGugGU-----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 76463 0.67 0.57971
Target:  5'- cCGCCccUCCAcCGucCGCCGGCCCG-GCCg -3'
miRNA:   3'- -GCGG--AGGUcGUc-GUGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 96515 0.67 0.578756
Target:  5'- gGCCUUUgggaaggAGCuGCGCCucuG-CCGCGCCg -3'
miRNA:   3'- gCGGAGG-------UCGuCGUGGu--CgGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.