miRNA display CGI


Results 41 - 60 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 30508 0.78 0.135939
Target:  5'- gCGuCCUUCAGCAccaagcGCGgCAGCCCGCGCUc -3'
miRNA:   3'- -GC-GGAGGUCGU------CGUgGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 30925 0.73 0.250708
Target:  5'- uCGCuCUCCAgGCuGCGCCcG-CCGCGCCg -3'
miRNA:   3'- -GCG-GAGGU-CGuCGUGGuCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 31040 0.7 0.424497
Target:  5'- gGCCgacagauagggCAGCGGCacggcgGCCAGCUCGCGCa -3'
miRNA:   3'- gCGGag---------GUCGUCG------UGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 31386 0.68 0.495825
Target:  5'- cCGUCgUCGGCGGCcccgccgcgcccGCCGcGCCCGcCGCCu -3'
miRNA:   3'- -GCGGaGGUCGUCG------------UGGU-CGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 32095 0.67 0.598846
Target:  5'- gGCgUgCAGCauguaccggAGCAUCAGCCCGCacucGUCg -3'
miRNA:   3'- gCGgAgGUCG---------UCGUGGUCGGGCG----CGG- -5'
10700 3' -63.4 NC_002794.1 + 32301 0.7 0.377907
Target:  5'- cCGCCg-CGGCGGCcgcGCCGGCCgCG-GCCg -3'
miRNA:   3'- -GCGGagGUCGUCG---UGGUCGG-GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 32481 0.67 0.595969
Target:  5'- uCGCCgCCAGCAccugaaugcucgacGUcuuGCCGGCucccgCCGUGCCg -3'
miRNA:   3'- -GCGGaGGUCGU--------------CG---UGGUCG-----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 32574 0.66 0.656577
Target:  5'- aGUCgcgCgCGGCGGUGCCggGGCCgGgGCCg -3'
miRNA:   3'- gCGGa--G-GUCGUCGUGG--UCGGgCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 33450 0.7 0.401575
Target:  5'- gGaCCUCgGGCGGcCGCCGGa-CGCGCCc -3'
miRNA:   3'- gC-GGAGgUCGUC-GUGGUCggGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 33526 0.7 0.409671
Target:  5'- aGCCucUCCGGCcuGGCcacCCAGCUggUGCGCCa -3'
miRNA:   3'- gCGG--AGGUCG--UCGu--GGUCGG--GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 33629 0.66 0.636367
Target:  5'- uGCagaUCguGCGGCACC-GCCgcacgggCGCGCUg -3'
miRNA:   3'- gCGg--AGguCGUCGUGGuCGG-------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 34040 0.77 0.1427
Target:  5'- cCGCCUgCuGCcGgGCCGGCCCGCGCa -3'
miRNA:   3'- -GCGGAgGuCGuCgUGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 34096 0.66 0.60845
Target:  5'- aGCCgUCgGGCGGC-CCGGaCCGCGaCg -3'
miRNA:   3'- gCGG-AGgUCGUCGuGGUCgGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 34398 0.66 0.637331
Target:  5'- aGCUUCUucucGCAGUACguGCCCGaCaCCg -3'
miRNA:   3'- gCGGAGGu---CGUCGUGguCGGGC-GcGG- -5'
10700 3' -63.4 NC_002794.1 + 34696 0.71 0.370229
Target:  5'- uCGUCacccgCCAGCAG-GCCcGCCgGCGCCa -3'
miRNA:   3'- -GCGGa----GGUCGUCgUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 34779 0.76 0.172912
Target:  5'- cCGCCcgcgCCAGCcgagucGGCcgaACCGGCCCGgGCCg -3'
miRNA:   3'- -GCGGa---GGUCG------UCG---UGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 34966 0.67 0.540942
Target:  5'- gCGCCUCCcgucccuGGCcacgaaacuGCGCCGGCUgCGgGCCc -3'
miRNA:   3'- -GCGGAGG-------UCGu--------CGUGGUCGG-GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 35515 0.67 0.560706
Target:  5'- cCGCCgugcCCAGCGucuacauccuGCACCGcgagacccggcGCUCGCGCg -3'
miRNA:   3'- -GCGGa---GGUCGU----------CGUGGU-----------CGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 35729 0.71 0.370992
Target:  5'- gGCCUCCGGCGGCcgcgcgucucacugGCUguccaacgacgucgcGGCaCCGuCGCCg -3'
miRNA:   3'- gCGGAGGUCGUCG--------------UGG---------------UCG-GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 35790 0.66 0.645996
Target:  5'- uCGUCUCCGGCGugacccuGCGCCcccGGaCCCGguuuccgggcCGCCg -3'
miRNA:   3'- -GCGGAGGUCGU-------CGUGG---UC-GGGC----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.