miRNA display CGI


Results 61 - 80 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 36010 0.7 0.393581
Target:  5'- gGgCUCgGGCGGCGgaauccgccguCCGGCCCG-GCCg -3'
miRNA:   3'- gCgGAGgUCGUCGU-----------GGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 36213 0.67 0.570189
Target:  5'- gGCCaCCAGCAGguaGCCgcaGGCCCG-GUCg -3'
miRNA:   3'- gCGGaGGUCGUCg--UGG---UCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 36278 0.66 0.60845
Target:  5'- cCGCgUCCcgcgacugcGGguGCACgAGCUCGCcCCg -3'
miRNA:   3'- -GCGgAGG---------UCguCGUGgUCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 36363 0.69 0.434557
Target:  5'- gGCCaCCGGguGCGC--GCCCGCGgCg -3'
miRNA:   3'- gCGGaGGUCguCGUGguCGGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 36644 0.72 0.326438
Target:  5'- uCGgCUCCGGCAGCcgauCCcgaaagAGUuuGCGCCa -3'
miRNA:   3'- -GCgGAGGUCGUCGu---GG------UCGggCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 36901 0.78 0.129474
Target:  5'- aGCgUCCAgaggucGCGGCGCCGGcCCCGCGaCCg -3'
miRNA:   3'- gCGgAGGU------CGUCGUGGUC-GGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 37338 0.67 0.541878
Target:  5'- gGCC-CgGGCGGCAgCAGgUCGgGCCc -3'
miRNA:   3'- gCGGaGgUCGUCGUgGUCgGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 37398 0.66 0.61807
Target:  5'- uCGCUguagagcgCCcGCuGCAgCCGGUCCaGCGCCg -3'
miRNA:   3'- -GCGGa-------GGuCGuCGU-GGUCGGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 37680 0.68 0.504902
Target:  5'- -uUCUCCAGCA----CGGUCCGCGCCg -3'
miRNA:   3'- gcGGAGGUCGUcgugGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 37741 0.72 0.326438
Target:  5'- gCGCCgCCGGCGGCGgCGcGgCgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUgGU-CgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 38006 0.68 0.485926
Target:  5'- aCGCCguaggCCuGCAGCGCUucgggaaAGCCCG-GCa -3'
miRNA:   3'- -GCGGa----GGuCGUCGUGG-------UCGGGCgCGg -5'
10700 3' -63.4 NC_002794.1 + 38257 0.68 0.504902
Target:  5'- gGCCUCCuGCgugaGGCG-CGGCCCccGCGCg -3'
miRNA:   3'- gCGGAGGuCG----UCGUgGUCGGG--CGCGg -5'
10700 3' -63.4 NC_002794.1 + 38496 0.67 0.570189
Target:  5'- aGCg--CGGCGGCGCCGGUcgCCGcCGCCu -3'
miRNA:   3'- gCGgagGUCGUCGUGGUCG--GGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 38549 0.69 0.477898
Target:  5'- cCGCCUCCccGCcagaAGC-CC-GCCgGCGCCu -3'
miRNA:   3'- -GCGGAGGu-CG----UCGuGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 39555 0.71 0.370229
Target:  5'- gGCCUCU-GCGGCGCCcuguacCCCGUGCUc -3'
miRNA:   3'- gCGGAGGuCGUCGUGGuc----GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 39686 0.67 0.57971
Target:  5'- gCGCUUCUucgucGCccGGCACC-GCCgGCGCUa -3'
miRNA:   3'- -GCGGAGGu----CG--UCGUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 40345 0.7 0.393581
Target:  5'- gCGCCaCCGGCGGCGCC-GCCUcuCGUCu -3'
miRNA:   3'- -GCGGaGGUCGUCGUGGuCGGGc-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 40542 0.66 0.607489
Target:  5'- aCGagggggCCGGCGGCAUgAGCUucucguuCGCGCCg -3'
miRNA:   3'- -GCgga---GGUCGUCGUGgUCGG-------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 41251 0.67 0.57971
Target:  5'- cCGCCgacgCCGGCGGC-CCGuCgUCGCGCUc -3'
miRNA:   3'- -GCGGa---GGUCGUCGuGGUcG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 41506 0.71 0.347841
Target:  5'- aCGgCUUCAGCAGCuCCGGUacuuguCCGgGCCg -3'
miRNA:   3'- -GCgGAGGUCGUCGuGGUCG------GGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.