miRNA display CGI


Results 81 - 100 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 41761 0.69 0.434557
Target:  5'- cCGCUUCCA-CGGagAUCAGCCCG-GCCg -3'
miRNA:   3'- -GCGGAGGUcGUCg-UGGUCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 41806 0.66 0.646959
Target:  5'- aGCagacgUCCAGCgaGGCGCCcagcaGGCCCGUGgUCg -3'
miRNA:   3'- gCGg----AGGUCG--UCGUGG-----UCGGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 41899 0.72 0.292971
Target:  5'- aGCgCUCCAGCAGCgcGCCacgAGCCCcucguGgGCCa -3'
miRNA:   3'- gCG-GAGGUCGUCG--UGG---UCGGG-----CgCGG- -5'
10700 3' -63.4 NC_002794.1 + 42233 0.66 0.645996
Target:  5'- aGCCgcgagaCGGCGGCGacgaacuCCgAGCCCGCuCCg -3'
miRNA:   3'- gCGGag----GUCGUCGU-------GG-UCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 42946 0.66 0.637331
Target:  5'- uCGCCaugucgcCCAGCacGGCguggauguagGCCAGCUggUGCGCCa -3'
miRNA:   3'- -GCGGa------GGUCG--UCG----------UGGUCGG--GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 43034 0.67 0.560706
Target:  5'- gGCCUCCAucgcGCGGCagGCCgAGCCgGCcacCCg -3'
miRNA:   3'- gCGGAGGU----CGUCG--UGG-UCGGgCGc--GG- -5'
10700 3' -63.4 NC_002794.1 + 43234 0.78 0.129474
Target:  5'- uGCgCUgCAGCGGCACCGGCCgGaaCGCCg -3'
miRNA:   3'- gCG-GAgGUCGUCGUGGUCGGgC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 43759 0.68 0.529752
Target:  5'- uGCCguUCC-GCAGCAgCCAGaucucgccgaacgcCCCGCGUCc -3'
miRNA:   3'- gCGG--AGGuCGUCGU-GGUC--------------GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 43822 0.66 0.656577
Target:  5'- gGCuCUCCAGCgaguGGCACaccuccucaCAGuCCCGCucgGCCc -3'
miRNA:   3'- gCG-GAGGUCG----UCGUG---------GUC-GGGCG---CGG- -5'
10700 3' -63.4 NC_002794.1 + 44106 0.69 0.460297
Target:  5'- gCGCCgaCgAGCGccGCAUCAGCUCGCGgCa -3'
miRNA:   3'- -GCGGa-GgUCGU--CGUGGUCGGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 44208 0.68 0.486822
Target:  5'- gGCCgacgUCCGGCucgGGCGCCgagGGCUCgGUGCCg -3'
miRNA:   3'- gCGG----AGGUCG---UCGUGG---UCGGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 44399 0.72 0.306027
Target:  5'- gCGCCcguUCCGGUcugACCGGCCgGCGCCg -3'
miRNA:   3'- -GCGG---AGGUCGucgUGGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 44501 0.72 0.292971
Target:  5'- uGUCUCaCGGCGGCccagACCgGGCCCGUGUCc -3'
miRNA:   3'- gCGGAG-GUCGUCG----UGG-UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 44704 0.7 0.377907
Target:  5'- cCGCCcggCCGcgaccGCGGCGacgUCGGCCgGCGCCg -3'
miRNA:   3'- -GCGGa--GGU-----CGUCGU---GGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 45735 0.7 0.417868
Target:  5'- gCGUCUCCAcGUAGCG-CAGCgCGCGgCg -3'
miRNA:   3'- -GCGGAGGU-CGUCGUgGUCGgGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 45904 0.7 0.377907
Target:  5'- cCGCCcgCCGcCGGCACCgggcgacgaGGCUCGCGCUu -3'
miRNA:   3'- -GCGGa-GGUcGUCGUGG---------UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 46212 0.75 0.213601
Target:  5'- cCGCCguUCCGGcCAGCucguCCAGCUCGCucGCCg -3'
miRNA:   3'- -GCGG--AGGUC-GUCGu---GGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 47334 0.68 0.504902
Target:  5'- cCGgCUCCcGCGGCGgCGGCCuccggacguuCGCGCUc -3'
miRNA:   3'- -GCgGAGGuCGUCGUgGUCGG----------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 47952 0.67 0.589264
Target:  5'- gCGCgUCC--CGGCGCCGGCugggcgaccgCCGCGCg -3'
miRNA:   3'- -GCGgAGGucGUCGUGGUCG----------GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 48074 0.69 0.469055
Target:  5'- gGCCggCCAGCGGgAgCAGCCgcCGCucGCCg -3'
miRNA:   3'- gCGGa-GGUCGUCgUgGUCGG--GCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.