miRNA display CGI


Results 101 - 120 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 48167 0.66 0.656577
Target:  5'- gCGCCgcUUCAcGCcGCugCAGCggaaCUGCGCCa -3'
miRNA:   3'- -GCGG--AGGU-CGuCGugGUCG----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 48249 0.74 0.245098
Target:  5'- gGCCg-CAGCAGgAUCAGCCCGCaGCa -3'
miRNA:   3'- gCGGagGUCGUCgUGGUCGGGCG-CGg -5'
10700 3' -63.4 NC_002794.1 + 48916 0.74 0.239593
Target:  5'- gGCCgcUCC-GCAGCGCCAGCgCCagGCGCUc -3'
miRNA:   3'- gCGG--AGGuCGUCGUGGUCG-GG--CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 48986 0.67 0.551268
Target:  5'- aGCCUCCAgGCcccGUucgaaGCUcuCCCGCGCCg -3'
miRNA:   3'- gCGGAGGU-CGu--CG-----UGGucGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 49228 0.69 0.451626
Target:  5'- gCGCCgCCAaCAGgGCCGucgacgggcGCCCGCGCa -3'
miRNA:   3'- -GCGGaGGUcGUCgUGGU---------CGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 49617 0.74 0.245098
Target:  5'- gGCg-CCGGCGGCGCCucGCCCGCcCCu -3'
miRNA:   3'- gCGgaGGUCGUCGUGGu-CGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 49715 0.66 0.653693
Target:  5'- uCGCCcCgGGCAGUcgaGCCagaccgugguggcgAGCCCGUagGCCg -3'
miRNA:   3'- -GCGGaGgUCGUCG---UGG--------------UCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 49800 0.68 0.523264
Target:  5'- aGCCgagCCAGgAGCAgCu-CCCGCgGCCa -3'
miRNA:   3'- gCGGa--GGUCgUCGUgGucGGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 49847 0.68 0.483243
Target:  5'- cCGCCauUCCgcgucGGCGGCGCCcGCCacccggacguggaGCGCCc -3'
miRNA:   3'- -GCGG--AGG-----UCGUCGUGGuCGGg------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 50784 0.77 0.1427
Target:  5'- gCGUCUCgGGCGGCGCCuccucGCCCgGCGUCg -3'
miRNA:   3'- -GCGGAGgUCGUCGUGGu----CGGG-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 51074 0.66 0.656577
Target:  5'- gCGaCCUCCgAGCGuggcGCGCuCGGaaaagacgaCCGCGCCu -3'
miRNA:   3'- -GC-GGAGG-UCGU----CGUG-GUCg--------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 51965 0.68 0.504902
Target:  5'- gGCCUCCGGgacCGGCAUCGuggcGCUCG-GCCg -3'
miRNA:   3'- gCGGAGGUC---GUCGUGGU----CGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 52168 0.66 0.656577
Target:  5'- aGgCggCGGCGGUGCgCAucGCCUGCGCCa -3'
miRNA:   3'- gCgGagGUCGUCGUG-GU--CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 52577 0.69 0.469055
Target:  5'- gCGCCUCagagccGCAGCACgCAGCCgaCGUccGCCc -3'
miRNA:   3'- -GCGGAGgu----CGUCGUG-GUCGG--GCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 52649 0.67 0.560706
Target:  5'- aGCCggagCGGCGGCA--GGCuCUGCGCCa -3'
miRNA:   3'- gCGGag--GUCGUCGUggUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 53052 0.77 0.153419
Target:  5'- gCGgCUCCAGCGuaGgCAGCgCCGCGCCg -3'
miRNA:   3'- -GCgGAGGUCGUcgUgGUCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 53105 0.67 0.57971
Target:  5'- gGaCC-CCGGCGGUuCCggAGCUCGCGUCg -3'
miRNA:   3'- gC-GGaGGUCGUCGuGG--UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 53215 0.67 0.569239
Target:  5'- uCGUCgUCgAGCGGCGaaacgguccguccUCGGCCCgccGCGCCg -3'
miRNA:   3'- -GCGG-AGgUCGUCGU-------------GGUCGGG---CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 53288 0.7 0.426164
Target:  5'- gCGaccaCUCCAGguGCcgagcggUCGGCCgGCGCCg -3'
miRNA:   3'- -GCg---GAGGUCguCGu------GGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 53531 0.67 0.551268
Target:  5'- aGCCgugggCgCGGCGGcCGCaCAGCCCGUggacguagacgGCCa -3'
miRNA:   3'- gCGGa----G-GUCGUC-GUG-GUCGGGCG-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.