miRNA display CGI


Results 121 - 140 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 53760 0.71 0.333462
Target:  5'- cCGCCgcugCCGGCGGCgggacGCCcGCgaCGCGCCc -3'
miRNA:   3'- -GCGGa---GGUCGUCG-----UGGuCGg-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 53917 0.75 0.208703
Target:  5'- uCGCCgUCGGCGGCGCCgccgaaccgAGCUCGCaGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUGG---------UCGGGCG-CGG- -5'
10700 3' -63.4 NC_002794.1 + 53999 0.72 0.292971
Target:  5'- gCGUCUCCAGCAGCuccCgCAGCaCgGcCGCCu -3'
miRNA:   3'- -GCGGAGGUCGUCGu--G-GUCG-GgC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 54830 0.71 0.347841
Target:  5'- gCGUCaugUUCGGCGGCACCcaacGCCCGUagGCCg -3'
miRNA:   3'- -GCGG---AGGUCGUCGUGGu---CGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 55596 0.77 0.157151
Target:  5'- uGCUUCUugaAGCGGCggaacGCCAGCCCGUGCa -3'
miRNA:   3'- gCGGAGG---UCGUCG-----UGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 55629 0.67 0.57971
Target:  5'- aCGCUggCCAGCAcGCggGCCGGCagGCGCa -3'
miRNA:   3'- -GCGGa-GGUCGU-CG--UGGUCGggCGCGg -5'
10700 3' -63.4 NC_002794.1 + 55793 0.79 0.111473
Target:  5'- gGCCUCCAGCgagcgcagcgccgGGCGCgGGCgCGCGCUg -3'
miRNA:   3'- gCGGAGGUCG-------------UCGUGgUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 56083 0.66 0.627699
Target:  5'- gGCCagcaggCCGcGCAGCACguGCgugCUGCGCUg -3'
miRNA:   3'- gCGGa-----GGU-CGUCGUGguCG---GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 56172 0.72 0.326438
Target:  5'- gGCC-CCGGUgcacguagAGCACCGGgCCGCGgCa -3'
miRNA:   3'- gCGGaGGUCG--------UCGUGGUCgGGCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 56236 0.69 0.459426
Target:  5'- gGCCUCCcacuccucgcaguAGCAGgGCaCGGCCacCGgGCCg -3'
miRNA:   3'- gCGGAGG-------------UCGUCgUG-GUCGG--GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 56563 0.72 0.31272
Target:  5'- cCGCC-CCcGCcGCcgACC-GCCCGCGCCg -3'
miRNA:   3'- -GCGGaGGuCGuCG--UGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 57332 0.68 0.523264
Target:  5'- gCGCgUCCuGCuGCAgCuGCUCGaCGCCa -3'
miRNA:   3'- -GCGgAGGuCGuCGUgGuCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 57441 0.69 0.469055
Target:  5'- gCGCCcgucaUCCAGCAccuGCuCCAcGCgCUGCGCCc -3'
miRNA:   3'- -GCGG-----AGGUCGU---CGuGGU-CG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 57488 0.72 0.306027
Target:  5'- gCGCgaCCAGguGCGCgC-GCCCGcCGCCu -3'
miRNA:   3'- -GCGgaGGUCguCGUG-GuCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 58011 0.68 0.52234
Target:  5'- uCGCCgCCggGGCcGcCGCCGGCgaacccgCCGCGCCg -3'
miRNA:   3'- -GCGGaGG--UCGuC-GUGGUCG-------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58064 0.73 0.254698
Target:  5'- gGCC-CCGGCGGCGgcgggacgggcggcCCGgcGCCCGCGCUc -3'
miRNA:   3'- gCGGaGGUCGUCGU--------------GGU--CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58128 0.73 0.262245
Target:  5'- aGCC-CCugGGCGGC-CUGGCCCGcCGCCu -3'
miRNA:   3'- gCGGaGG--UCGUCGuGGUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 58291 0.68 0.504902
Target:  5'- gCGCUaCCAGgAGCACCAcGagaccgCCGCGCUc -3'
miRNA:   3'- -GCGGaGGUCgUCGUGGU-Cg-----GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58437 0.73 0.256423
Target:  5'- aCGCCgaggCCAcGCuGCGCCuGgCCGCGCUg -3'
miRNA:   3'- -GCGGa---GGU-CGuCGUGGuCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58714 0.68 0.51405
Target:  5'- gCGCUUCCu---GCACCGcGUCuCGCGCCu -3'
miRNA:   3'- -GCGGAGGucguCGUGGU-CGG-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.