miRNA display CGI


Results 141 - 160 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 58780 0.66 0.60845
Target:  5'- gGCCUacgUCAGCGcGCugCAcGaCCgGCGCCu -3'
miRNA:   3'- gCGGA---GGUCGU-CGugGU-C-GGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 58866 0.69 0.451626
Target:  5'- uCGCCgaCCGGCAGC-CguGCgcgCCGCGCa -3'
miRNA:   3'- -GCGGa-GGUCGUCGuGguCG---GGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 59293 0.71 0.347841
Target:  5'- uCGCCgcucgacgCCGcGCAGCGCCAcggcgcGCCCGacuuCGCCg -3'
miRNA:   3'- -GCGGa-------GGU-CGUCGUGGU------CGGGC----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 59348 0.68 0.495825
Target:  5'- aCGCgCUCUacaacGGCugcuGCGCCaccacGGCgCCGCGCCu -3'
miRNA:   3'- -GCG-GAGG-----UCGu---CGUGG-----UCG-GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 59518 0.66 0.60845
Target:  5'- gGCUUCCcGCuGCACCcggcGCUgGCGCa -3'
miRNA:   3'- gCGGAGGuCGuCGUGGu---CGGgCGCGg -5'
10700 3' -63.4 NC_002794.1 + 59552 0.67 0.570189
Target:  5'- -aCCgCCAGUGGCACCGcucGCCCuucucGCGCUa -3'
miRNA:   3'- gcGGaGGUCGUCGUGGU---CGGG-----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 59657 0.67 0.57971
Target:  5'- uCGCCa-CGGC-GCugCAgagccGCCUGCGCCu -3'
miRNA:   3'- -GCGGagGUCGuCGugGU-----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 59983 0.67 0.551268
Target:  5'- uCGaCCgCUGGCuGCGCCAGuucaCCgGCGCCg -3'
miRNA:   3'- -GC-GGaGGUCGuCGUGGUC----GGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 60057 0.7 0.42533
Target:  5'- -aCCUUCGGCcgccGCACCGugccgccGCCCGCGCa -3'
miRNA:   3'- gcGGAGGUCGu---CGUGGU-------CGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 60153 0.74 0.234191
Target:  5'- aGCUacuUCCAGCuGCccaaCAGCCCGCGCg -3'
miRNA:   3'- gCGG---AGGUCGuCGug--GUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 60642 0.79 0.10122
Target:  5'- gGCg-CCGGCGGCGCCGGCCacccggcgCGCGCCg -3'
miRNA:   3'- gCGgaGGUCGUCGUGGUCGG--------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 61256 0.67 0.598846
Target:  5'- uCGCgCUCCucucccucgAGCGCCcguacgagcaGGUCCGCGCCg -3'
miRNA:   3'- -GCG-GAGGucg------UCGUGG----------UCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 61515 0.68 0.495825
Target:  5'- cCGCCggaCGGCGGcCGCCGGCggCCGcCGCg -3'
miRNA:   3'- -GCGGag-GUCGUC-GUGGUCG--GGC-GCGg -5'
10700 3' -63.4 NC_002794.1 + 61736 0.66 0.656577
Target:  5'- cCGCC-CC-GCGGa---AGCCCGCGCg -3'
miRNA:   3'- -GCGGaGGuCGUCguggUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 61811 0.73 0.286608
Target:  5'- cCGCucauCUCCGGCGGcCGCCggcGGCCgGCGUCa -3'
miRNA:   3'- -GCG----GAGGUCGUC-GUGG---UCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62064 0.68 0.532542
Target:  5'- aCGCCggcggcgacgCCGGCGGCGacgaCGGCgacgcggCGCGCCg -3'
miRNA:   3'- -GCGGa---------GGUCGUCGUg---GUCGg------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62288 0.7 0.401575
Target:  5'- gGCCUgCuGCcGCuCCgAGCCCGCGCg -3'
miRNA:   3'- gCGGAgGuCGuCGuGG-UCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 62326 0.68 0.495825
Target:  5'- cCGCC-CCucGCuGGCGg-AGCCCGCGCCg -3'
miRNA:   3'- -GCGGaGGu-CG-UCGUggUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62479 0.7 0.423665
Target:  5'- gCGCCUCgacgagCgcgaguggacggcgGGCGGCGCC-GCCgGCGCCu -3'
miRNA:   3'- -GCGGAG------G--------------UCGUCGUGGuCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 62711 0.68 0.532542
Target:  5'- cCGCCgacgcgacCCAGCGagacGCACUucccgccGCCCGCgGCCg -3'
miRNA:   3'- -GCGGa-------GGUCGU----CGUGGu------CGGGCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.